Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00495 ATGTTTTCTTCTATCAAATTGTTTTCCTTTACTCAATTTAACTTCTTTTTCTTCTCCATTTTTCTCTTCTTAGCTTCTCAATACGACGCCGTTTCACTCTATTCCGATAAATCAACACTTCTCCGTCTCAAAACCTCCCTCTCCGACCCCACCGGAGTTCTCTCTTCATGGAGCTCTTCCTCAAGCCACTGTTCCTGGTATGGTGTACACTGTGATTCAAACTCCCGTGTCGTTGCTCTCAATATCACCGGTGCCGGAGATGGTAACCGGAGTTCTCACTCGTGTTCTGATTTTAGTATGTTTCCGCTTTATGGATTTGGAATTAGGAGAAGCTGTTTGGGTTTTAAGGGTTCTTTGTTTGGAAAGTTTCCATCTTTGATCAGTGAGTTAACTGAGCTTAGGGTTTTGTCTTTACCTTTCAATGGGTTGGAGGGTTCGATTCCTCAAGAGATTTGGAGTATGGAGAAACTTGAAGTTCTTGATTTAGAAGGTAATTTCATTAGTGGTTATTTACCTTTTCATTTTCAAGGTTTGAGAAAATTGAGGGTTTTGAATTTGGGGTTTAATAAGATAGTTGGAATGGTACCTAGTGTTTTATATTCTCTTGAGAGTTTGGAAGTTTTGAATTTAGCTTCAAATGATTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCTGAGGAGATTGGTGAGAATTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACAATTTGGTTGAAGAGATTCCAAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACGCTTTTGTTGTATTCAAATTTGTTGGAAGAGGGTATTCCTGCTGAATTTGGGAACCTTAAGAGTCTTGAGGTGTTGGATGTTTCGAGGAATACACTTAGTGGTTCTATTCCTCGCGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTCTCCAACCTTTTCGATCCGGTCGGGGATGTTGGGTTTGTTACTTTGAATGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAGGAAGTTGTGTTGCTTCCTAAGCTTACAATTTTGTGGGCTCCCATGGTGAATTTGGAAGGAAGTTTTCCTAGGAGTTGGGGTGCTTGTGGTAATTTGGAGATGGTTAATTTGGCCCAGAATTTCTTCACTGGAGAGTTTCCTAACCAGCTTGGTTTCTGTAAGAAGCTGCATTTTCTTGATCTAAGCTCAAACAATCTTACTGGGCAGCTTTCTGAGGAACTTCATGTTCCATGTATGACTGTGTTTGATGTTAGCGTGAACAAGTTATCCGGTTCGGTTCCTGATTTCTCCAACAGTGGTTGTTCTCCCTTTCCTTTGTGGAATGGGAACCTGTTTGAAACCAATGATGTTACGACTCCTTATGCATCATATTTCTCATCGAAAGTCCGTGAGAGAACACTTTTCACATCATTAGGGGGAGTTGGCCTTTCAGTCTTTCACAGCTTTGAGCAAAACAACTTCACTGGCATTCAGTCACTGCCAATAGCACATGACAGGATGGAGGAAAAGAGTGGTTACACACTTCTTGTTGGAGAGAACAAGCTCACAGGACCTTTTCCTACATATTTATTTCAGAAATGCGATGGATTAGATGCATTGCTTTTGAATATTTCAGGACTAATTCCCTCTACATTAGGGGATTCGGTCTCTCTTGTTTCCCTGAATCTCAGTAGAAACCGGTTACTAGGTCAGATTCCCACCCGCCTCGGACAGATGAATAATCTGAAGTTTCTTTCTTTGGCTGATAATCACTTGAGCGGTTCAATTCCTACCGGCCTAGGAAATTTGTACTCTTTAAAAGTCTTGGACCTTTCTGCAAACTCTCTTACTGGTGAGATTCCAAATTTTATCGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGGCAAATGTCACGACACTCTCAGTATTCAACGTGTCTTTCAATAACTTATCTGGATACTTGCCGTCAAATAGTAGCCTGATCAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTTCCTGCCGCGGAGTTTCTCTGACTGTGCCTTCGGCAAATCAACAAGGGCAGTTTGATGACAATTCTTCTAGTACTGCACCAGCTACTGGAAAAAATGATAACGGTTTCAGCGCTATTGAAATAGCATCTATAACTTCTGCTTCTGCCATTGTTTCAGTTCTTATAGCCCTCATTGTTCTGTTCTTCTTCACGCGAAGGTGGAAGCCGAATTCCAGGGTTGGTGGTTCTGCCAAAAGAGAAGTTACAGTGTTTACTGATATCGGCGTTCCATTGACATTTGAAAATGTTGTCCAAGCCACGGGAAATTTTAATGCAAGCAACTGTATTGGGAGTGGAGGATTCGGCGCAACTTATAAGGCATGGATATCACAAGGAATCTTGGTGGCAGTGAAACGTCTTTCAGTAGGACGTTTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTAACCTTGATTGGCTACCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATCTTTCAGGCGGTAATCTTGAAAAGTTCATCCAGGAGCGATCCACAAGGGCTGTAGATTGGAAAATTCTTCACAAGATTGCATTGGACATAGCGCGTGCGCTTTCCTATCTGCATGATCAATGTGTACCGCGTGTTCTTCACCGTGATGTCAAGCCTAGTAATATCTTGTTGGATGATGATTTCAATGCTTATCTATCTGACTTTGGACTCGCCAGACTTTTGGGAACTTCTGAGACCCATGCTACAACCGGTGTTGCAGGAACATTTGGTTATGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCCGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTCGAGTTGCTTTCTGATAAGAAGGCATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAATATAGTAGCATGGGGATGCATGCTACTGAGGGAAGGAAGAGCGAAGGAGTTTTTCGCGGCAGGTTTATGGGACGCCGGACCAGAAAATGATTTGGTAGAGCCCCTTGTGCGGCTGTGCTCTTTTGTAATCATTATTAATTGGTGCGACTTGAAGTGGAGGTCATGGAGCACACTAAAGTCATCAGTTGTTTTGGAGTACAAGAGGTGTTTAAATTATGTCTGTGGACACCGAGATACAAGCTGCCTAGCAGTAGCAGATACTGAATATTGGCATGAGGAAATGAACTTTCTGATCAGAGCCACCAGAGCTGTGTTAGTCTTCTGGGTTTGGTCTAAAGCTGCAACATACAAAGCATACTATGTCAATAGCAAAGCCGCCGAATTGTTTTCCATGTAG 3450 0.4203 MFSSIKLFSFTQFNFFFFSIFLFLASQYDAVSLYSDKSTLLRLKTSLSDPTGVLSSWSSSSSHCSWYGVHCDSNSRVVALNITGAGDGNRSSHSCSDFSMFPLYGFGIRRSCLGFKGSLFGKFPSLISELTELRVLSLPFNGLEGSIPQEIWSMEKLEVLDLEGNFISGYLPFHFQGLRKLRVLNLGFNKIVGMVPSVLYSLESLEVLNLASNDLNGSVPGFVGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNNLVEEIPKSLGNCVGLRTLLLYSNLLEEGIPAEFGNLKSLEVLDVSRNTLSGSIPRELGNCKELSVVVLSNLFDPVGDVGFVTLNDELNYFEGSMPEEVVLLPKLTILWAPMVNLEGSFPRSWGACGNLEMVNLAQNFFTGEFPNQLGFCKKLHFLDLSSNNLTGQLSEELHVPCMTVFDVSVNKLSGSVPDFSNSGCSPFPLWNGNLFETNDVTTPYASYFSSKVRERTLFTSLGGVGLSVFHSFEQNNFTGIQSLPIAHDRMEEKSGYTLLVGENKLTGPFPTYLFQKCDGLDALLLNISGLIPSTLGDSVSLVSLNLSRNRLLGQIPTRLGQMNNLKFLSLADNHLSGSIPTGLGNLYSLKVLDLSANSLTGEIPNFIENMRNLTDVLLNNNNLSGHIPAGLANVTTLSVFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQGQFDDNSSSTAPATGKNDNGFSAIEIASITSASAIVSVLIALIVLFFFTRRWKPNSRVGGSAKREVTVFTDIGVPLTFENVVQATGNFNASNCIGSGGFGATYKAWISQGILVAVKRLSVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLSGGNLEKFIQERSTRAVDWKILHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLREGRAKEFFAAGLWDAGPENDLVEPLVRLCSFVIIINWCDLKWRSWSTLKSSVVLEYKRCLNYVCGHRDTSCLAVADTEYWHEEMNFLIRATRAVLVFWVWSKAATYKAYYVNSKAAELFSM 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00495 1149 Pfam Protein kinase domain 809 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00495 1149 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 590 688 - -
Trre12g00495 1149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Trre12g00495 1149 SMART serkin_6 806 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00495 1149 ProSiteProfiles Protein kinase domain profile. 806 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00495 1149 Gene3D Phosphorylase Kinase; domain 1 770 881 - -
Trre12g00495 1149 SMART LRR_typ_2 202 224 IPR003591 -
Trre12g00495 1149 SMART LRR_typ_2 643 666 IPR003591 -
Trre12g00495 1149 SMART LRR_typ_2 178 201 IPR003591 -
Trre12g00495 1149 SMART LRR_typ_2 248 272 IPR003591 -
Trre12g00495 1149 SMART LRR_typ_2 595 619 IPR003591 -
Trre12g00495 1149 SMART LRR_typ_2 154 177 IPR003591 -
Trre12g00495 1149 SMART LRR_typ_2 296 320 IPR003591 -
Trre12g00495 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 341 516 - -
Trre12g00495 1149 Pfam Leucine Rich Repeat 621 642 IPR001611 GO:0005515
Trre12g00495 1149 Pfam Leucine Rich Repeat 250 272 IPR001611 GO:0005515
Trre12g00495 1149 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 268 1039 - -
Trre12g00495 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 770 881 - -
Trre12g00495 1149 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 241 332 - -
Trre12g00495 1149 PRINTS Leucine-rich repeat signature 619 632 - -
Trre12g00495 1149 PRINTS Leucine-rich repeat signature 412 425 - -
Trre12g00495 1149 Gene3D Ribonuclease Inhibitor 33 223 IPR032675 -
Trre12g00495 1149 SUPERFAMILY Protein kinase-like (PK-like) 787 1017 IPR011009 -
Trre12g00495 1149 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Trre12g00495 1149 ProSitePatterns Protein kinases ATP-binding region signature. 812 834 IPR017441 GO:0005524
Trre12g00495 1149 SUPERFAMILY RNI-like 121 452 - -
Trre12g00495 1149 Gene3D Ribonuclease Inhibitor 340 473 IPR032675 -
Trre12g00495 1149 Gene3D Ribonuclease Inhibitor 479 728 IPR032675 -
Trre12g00495 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 882 1063 - -
Trre12g00495 1149 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Trre12g00495 1149 Gene3D Ribonuclease Inhibitor 224 337 IPR032675 -
Trre12g00495 1149 SUPERFAMILY L domain-like 530 705 - -
Trre12g00495 1149 Gene3D Transferase(Phosphotransferase) domain 1 882 1066 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00495 Trre-Chr12 3987791 3993110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00495 35 1053 Receptor kinase-like Gene Family AT3G02130 60.556 0.0 1207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre12g00495 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00495 - - vum:124828178 1526.15