Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00491 ATGAGCACAAACACAAAACATAGTTACAAACTCTCTGTGAAAAAAGCTACAAGAAGAACAAGAAGAAGACAATTGGAAGGAAAATGCAAGTCTAAGAAGAAGCTTTCACAGAAGTTACAAGCACTTAAGAATTTAATTCCTTCTCATAATGGTGATGAAGTGAAAACTGATGAATTGTTCAAGGAAACTGCTGATTATATAGTTTTTCTAAGGACAAGGGTGTTGATTCTTCAGAAGCTCATTGAGATTTATGGAAACAACACTGAGAATCAACATGATGTATTGTTATAG 291 0.3333 MSTNTKHSYKLSVKKATRRTRRRQLEGKCKSKKKLSQKLQALKNLIPSHNGDEVKTDELFKETADYIVFLRTRVLILQKLIEIYGNNTENQHDVLL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00491 96 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 9 84 IPR044660 GO:0006355
Trre12g00491 96 MobiDBLite consensus disorder prediction 11 30 - -
Trre12g00491 96 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 84 IPR036638 GO:0046983
Trre12g00491 96 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00491 Trre-Chr12 3973045 3973335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00491 22 83 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 29.032 4.92e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00491 - - cam:101507971 134.035