Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre12g00490 | ATGAATTCTCCAACTACTTCCGATGCCGTTACGGCGGCGGAGTCTCTCTCCGACCACCGCGGAATCAGCATGTCAAATACTATCCACTCCGAAGTCGCCTCTTACTTGCGGTTACCTTCACTTCCGGTTTTCTGCGGAGCTTCCGATCAAGACCTACGACTCTTCGATTCACCGTTGCTGTTGGACCGCGTCGATATTCTCTCGCAGTCTAGCAAGATCGCTGAGATGCTCCGAAACACTGATGTTTCGTACCTGAATTTAAGAGATGATGCCAAGGCTGTTCCGTATAACTACGTTGAGCCTTTAGAACTCCATGATCAAGTTCTCAGGTGCAATCCTGAAGCATTTGAATGCAGTACTGCAGGTCCTGTCAAGGAGAAGATCTCTGGTAGTGCATTACCTGAAAAGAAGCTTGCTGAATCAAATTTTTCTGTCCCGAGTCAGACTCAAAAGGACTATAATGCAACACATAGCCGACAGCTTGATAATTTTTCTACAAATGACATTTCTACATTGTCTTCTAAGAAATCAAAAGTTAAGAAGAAAGCTGGTAACGGATTATCTATTGCACCCGACCCTGCTGAGCTTCAAGATGCTAGCATTGGAAGATTTCGCGAGTTTTTGGAGGACTTATGTAGCAAGGCTGAATCGAATAGTGATCATCTAGATGAAACAGTAGAATGGTTGCCATTGCCACTTTCAGATCTTAGAACGCTTGTTAATGAAATAATGACTATACGTGAGAAGAAACTTTTGCATTTGGTCCCTGTAGAACTCCTTGTTAGACTGCTAAAGGTTTTAGATCATCAGATACACAGAGCAGAAGGCCTGTCAATCGACGATTGTGACAATTCCAATTCAGAACAAGTTTCATCTCTTTTAGCTGCGATGGAATCCATTCATGCTGCACTGGCGGTGATGGCTCATACTGACATGCCAAAACAACTTTATAAAGAAGAGGTCATTGAGAGAATTCTGGAGTTTTCCAGGCATCAGATAATGGATGTGATGTGTGCATGTGATCCTTCATACCGTGCGTTATACAGACCTAGTGAAAACACTGGATTTGAAGTTGATGATGAAGAATATGATGCTGAATTTGGTTCAGCAAGCAAAAAACGACGAACTAGCAGCAAGACTGTGAAGTTGAAGAAATCAGCATCAAGCAGGTTCTCTAGTGCTGTGAATGTTATTCTTCAGAAGTTGTGTACTGTTCTTGGACTACTCAAGGATTTGTTGTTAATAGAGAGGTTGTCAGATAGTTGCATTTTACAACTTGTAAAAACAAGCATTTCAACATTCTTGGTTGATAACATCCAGCTCTTGCAATTGAAGGCAATTGGTTTACTCAGTGTGATATTCTATTTATACACACAACATCGCACTTATGTGTTAGATGAAATGCTTCATCTTCTTTGGAAATTACCGCATTCAAAGCGAGCTTTAAGGAATTATCACATACGTGAGGAAGAGCAAAGACAGATCCAAATGATTACTGCTTTGTTGATCCAATTAATTCATTGTAGTGCTAACCTTCCTGATACTTTAAGACAAGCATCAAGTGGCAACTCTGTATTGGAAGTCTCGGTTGATGCTAGTTATCCAACTAATTGCCGCGATGCAGTAAGAGAGGCCTGCTGTCTATTTTGGAGCCGTGTACTTCAGCGAATTGCAAGTGCAAAGACTCAGGATGCTTCTGAACTGAAATCCATAATGGAGAATCTTGTTACTGATTTACTGACCACTCTAAATTTACCCGAATATCCTGCTTCAGCTTCTATTCTAGAGGTTCTATGTGCCATACTAATTAATAATGCTGGGTCAAACTCCAAGGATTTCGCTGCACGTTCCATGGCAATTGATATTCTTGGCACTATTGCTGCAAGGTTGAAGCGTGATGCTGTGATTTGTAGCCGGGAAAAGTTCTGGGTACTTCAAGATTTACTTGGTGAGAATGCCGCTCCTCGTCATCATCCAAAAGATACATGTTGTATCTGTTTGGGTGGAAGGATTGAAAATTTGTTCATATGTTCCGGCTGCAGTAGGCTTTTTCATGCTGACTGCCTGGACATAAAAGAAAATGAAGTTCCCAACCGGAACTGGTACTGTCATATGTGCATCTGCTCAAAGCAACTGGTTGTATTACAATCATATTGCAATTCCCAGCGCAAGGATGATGTAAAAAAGAATCGTAAAGTGTCAATGGATGATTCTGCATTTTCTAACCATGAAATTGTTCAACAATTGCTTTTGAATTACCTTCAAGATGTCACCTCCGCTGATGACCTGCATATTTTCATTTGCTGGTTTTATCTGTGCGCATGGTATAAAAATGATCCAAAATGTCAGCAGAAGCCCATTTACTACTTTGCTAGGATGAAATCAAGAACCATAATACGGGATTCTGGTACTGTTTCTTCTATGCTGACGCGAGATTCAATCAAGAAGATTGCTCTAGCTTTAGGCCAAAAAAGTTCATTTAGTCGAGGCTTTGATAAGATTTTTCATACGCTTTTGGTAAGTTTGAAGGAGAACTCTCCAGTTATTAGGGCTAAAGCTTTACGAGCAGTTAGCATCATTGTAGAGGCTGATCCAGAGGTATTGGGTGATAAACAAGTTCAAACATCCGTTGAAGGTAGGTTCTGTGACAGTGCAATATCTGTTAGAGAAGCAGCATTGGAACTTGTTGGTAGGCATATTGCTTCACATCCAGATGTGGGTTTTAAGTATTTTGAGAAGATTACAGAGAGAATCAAAGATACTGGAGTGAGTGTTCGAAAACGAGCCATAAAAATTATTCGAGATATGTGCAGCTCAAATGCCAACTTCTCTGAGTTTACAAGAGCCTGCACAGCGATAATATCACGTGTTATTGATGATGAATCCAGTATCCAGGATCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAGGAGCCTTCTGCTTCACAAACTCAGGTCTTTGGAGATGGTAGTACTGTTCCACTTGAGGTAGCTAAGAAAACAGAACAAATTGTTGAAATGTTGAAGAGACTGCCCAATAATCAGCTTCTTGTAACTGTAATAAAGCGCAACTTGACACTTGATTTTTTACCACAATCTACAAAAGCAATTGGGGTCAACCCAGTGTCCCTTGTAACAGTGCGTAAGCGTTGTGAGTTGATTTGCAAATGCTTGCTGGAGAAGATATTGCAGGTTAACGAAATGAACAGTGTTGAAGTGGAAAAGCATGTGCTTCCGTATGTGCTAGTCTTGCATGCATTTTGTCTTGTGGACCCAACTCTCTGTGCACCAGCTTCTAACCCTTCGCAGTTTGTCATGACTTTGCAGCCATATCTAAAGACTCAGGTTGACAATAGCATGGTCGCACAACTACTTGAGAGTATAATATTTATAATTGATGCTGTGTTGCCATTGCTGCGTAAGTTACCTCCGAGTATTGTGGATGAACTTGAGCAAGATTTGACGCAGATGATTCGCCGACATTCGTTCTTGACAATTGTCCATGCTTGTATCAAGTGCCTCTGCAATATGAGTAAAATTGCTGGGCAAGGGGCTACTGCAGTCGAGCATCTTATTCAGGTCTTCTTCAAATGTTTGGAAGATACCCAGGCAGTTGTAAACAACCAGCAAGTTGGGCGATCTCTCTTTTCTCTTGGTTTGCTTATTCGTTACGGAAACTGTTTGTTTGCAAGCTCTGGTAATGAACTTGTTGATGTCAGAAGGAGTCTCGGCTTGGTTATGAAGTATCTTGGTGTGGAGGATTGTTCTCTCCAGGTTAGATCATTGCAGGCACTAGGATATGTTCTAATTGCAAGGCCTGAATATATGTTAGAAAATGACATTGGAAAGATACTGGAGAGAACATTGTCTAGCGTTGCTAATGAACGGCTAAAGATTCAAGCATTACAAAATATGTTTGAGTATCTTCTTGATGCTGAAAGCAAAATGGAAACAGACAAAGTTGATGGTAATGTACCTGGTCACTTGGTCGGGGCTGGGCAGAGTGTACCTGTTGCTGCTGGTGCTGGGGATACAAACATATGTGGGGGTATAATTCAGCTGTACTGGGATAATATTTTGGGCAGATGTTTGGATTTGAACGAACATGTTCGACAAACAGCCTTGAAGATTGTTGAAGTTGTGTTGCGCCAAGGTCTTGTTCATCCCATCACCTGTGTTCCACATCTTATAGCACTAGAAACAGATCCTCTGGAGTCAAATTCAAAGTTGGCTCATCTTCTCCTAATGAATATGAATGAGAAGTACCCTGCATTTTTTGAAAGTCGATTGGGTGATGGACTTCAAATGTCGTTTATGTTCATGCAATCTATTTGTGTCAGTCCTAATGAAAATGTTAACCACAAGACCCAATCTAAGATCCCTGTTTCTGGAAAAGGGAAGCCTCAGGCTGACTCACTCACTCAATCAAGAGTTGGGGTTTCTCGAATATACAAGCTCATCCGAGGGAACCGGATATCGAGGAACAAATTTATGTCCTCAATTGTGCGAAAATTTGATAATCCAAGATGCAACAAATTTGTAATAGGTTTCTTAATGTATTGCACAGAGGTCCTTGCCTTGCTTCCCTTCATTGCACCCGATGAACCACTTTATTTAATCTATGCTATTAATCGAGTAGTTCAGGTTAGGGCTGGTCCGCTGGAGGCGAACTTCAAAGCCTGGAGTTCAAGCTTGTTACGAAGTGAGGGTGACAGTACACCTCATGGGAATGGAATGTATCCACAGGCACCAAATGAATCTATTCATACAACCCAAGTCCAGTCAGTGGACTTAAATGGCACATTTCAGCAAAATGTAGATGTTCAGCCCTTCCTCAATGATATGACATCAGTGGATTTAAATGGAACAAATCACCAATTACCAGATTATCCTTTATCACATAATGGTAGATCAAAAGTAAAGCTACATGCTGCAGGTTTTGCAAATTCCTTTACCTTCTCAAAAGATGATCTGGAGAAAATTCAGGCCGACTGTTTATCTGCAATTGCATTGCAACTTCTTTTGAAGTTAAAGAGACACCTAAAAATCATGTATAGTCTCGATGATGCCAGATGTCAGGCTTATTCTCCAAGCGAACCACCGAAACCTGGAGATGTTTTTTCAAGACAGAATGTTCCATTTAATATTGGTGAATCTCAGTTCAGTTTGCCTACATGTCCACAAGAATTAATACAAAGATATCAGGAGTTTAAGAATGCATTGAAGGAAGACACAGCGGATTATTCACTCTACACAGCAAATATAAAACGAAAGCGACAAACACCCAGAAAAGTTCGGAAATCTGGACCGATGGCAGGTGCTAATATTGATGAGGACGACGATGAGGAATGGGCTGGTGGAATGCGCAATATAAATTTTAGTGGTGGCCGCAGAACTAGCCTTAGAAACTCCAGACAATACTGA | 5427 | 0.4096 | MNSPTTSDAVTAAESLSDHRGISMSNTIHSEVASYLRLPSLPVFCGASDQDLRLFDSPLLLDRVDILSQSSKIAEMLRNTDVSYLNLRDDAKAVPYNYVEPLELHDQVLRCNPEAFECSTAGPVKEKISGSALPEKKLAESNFSVPSQTQKDYNATHSRQLDNFSTNDISTLSSKKSKVKKKAGNGLSIAPDPAELQDASIGRFREFLEDLCSKAESNSDHLDETVEWLPLPLSDLRTLVNEIMTIREKKLLHLVPVELLVRLLKVLDHQIHRAEGLSIDDCDNSNSEQVSSLLAAMESIHAALAVMAHTDMPKQLYKEEVIERILEFSRHQIMDVMCACDPSYRALYRPSENTGFEVDDEEYDAEFGSASKKRRTSSKTVKLKKSASSRFSSAVNVILQKLCTVLGLLKDLLLIERLSDSCILQLVKTSISTFLVDNIQLLQLKAIGLLSVIFYLYTQHRTYVLDEMLHLLWKLPHSKRALRNYHIREEEQRQIQMITALLIQLIHCSANLPDTLRQASSGNSVLEVSVDASYPTNCRDAVREACCLFWSRVLQRIASAKTQDASELKSIMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLGENAAPRHHPKDTCCICLGGRIENLFICSGCSRLFHADCLDIKENEVPNRNWYCHMCICSKQLVVLQSYCNSQRKDDVKKNRKVSMDDSAFSNHEIVQQLLLNYLQDVTSADDLHIFICWFYLCAWYKNDPKCQQKPIYYFARMKSRTIIRDSGTVSSMLTRDSIKKIALALGQKSSFSRGFDKIFHTLLVSLKENSPVIRAKALRAVSIIVEADPEVLGDKQVQTSVEGRFCDSAISVREAALELVGRHIASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCSSNANFSEFTRACTAIISRVIDDESSIQDLVCKTFYEFWFEEPSASQTQVFGDGSTVPLEVAKKTEQIVEMLKRLPNNQLLVTVIKRNLTLDFLPQSTKAIGVNPVSLVTVRKRCELICKCLLEKILQVNEMNSVEVEKHVLPYVLVLHAFCLVDPTLCAPASNPSQFVMTLQPYLKTQVDNSMVAQLLESIIFIIDAVLPLLRKLPPSIVDELEQDLTQMIRRHSFLTIVHACIKCLCNMSKIAGQGATAVEHLIQVFFKCLEDTQAVVNNQQVGRSLFSLGLLIRYGNCLFASSGNELVDVRRSLGLVMKYLGVEDCSLQVRSLQALGYVLIARPEYMLENDIGKILERTLSSVANERLKIQALQNMFEYLLDAESKMETDKVDGNVPGHLVGAGQSVPVAAGAGDTNICGGIIQLYWDNILGRCLDLNEHVRQTALKIVEVVLRQGLVHPITCVPHLIALETDPLESNSKLAHLLLMNMNEKYPAFFESRLGDGLQMSFMFMQSICVSPNENVNHKTQSKIPVSGKGKPQADSLTQSRVGVSRIYKLIRGNRISRNKFMSSIVRKFDNPRCNKFVIGFLMYCTEVLALLPFIAPDEPLYLIYAINRVVQVRAGPLEANFKAWSSSLLRSEGDSTPHGNGMYPQAPNESIHTTQVQSVDLNGTFQQNVDVQPFLNDMTSVDLNGTNHQLPDYPLSHNGRSKVKLHAAGFANSFTFSKDDLEKIQADCLSAIALQLLLKLKRHLKIMYSLDDARCQAYSPSEPPKPGDVFSRQNVPFNIGESQFSLPTCPQELIQRYQEFKNALKEDTADYSLYTANIKRKRQTPRKVRKSGPMAGANIDEDDDEEWAGGMRNINFSGGRRTSLRNSRQY | 1808 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre12g00490 | 1808 | ProSiteProfiles | Zinc finger PHD-type profile. | 660 | 709 | IPR019787 | - | |
| Trre12g00490 | 1808 | FunFam | Sister chromatid cohesion protein | 812 | 980 | - | - | |
| Trre12g00490 | 1808 | Pfam | HEAT repeat associated with sister chromatid cohesion | 855 | 896 | IPR026003 | - | |
| Trre12g00490 | 1808 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 717 | IPR013083 | - | |
| Trre12g00490 | 1808 | PANTHER | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 21 | 181 | IPR033031 | GO:0003682|GO:0010468|GO:0061780 | |
| Trre12g00490 | 1808 | MobiDBLite | consensus disorder prediction | 1760 | 1783 | - | - | |
| Trre12g00490 | 1808 | SMART | PHD_3 | 662 | 707 | IPR001965 | - | |
| Trre12g00490 | 1808 | SUPERFAMILY | ARM repeat | 744 | 1279 | IPR016024 | - | |
| Trre12g00490 | 1808 | Pfam | Sister chromatid cohesion C-terminus | 1349 | 1547 | IPR024986 | - | |
| Trre12g00490 | 1808 | Gene3D | - | 833 | 1210 | IPR011989 | - |
Showing 1 to 10 of 13 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre12g00490 | K06672 | - | gmx:100792021 | 2791.14 |
Showing 1 to 1 of 1 entries