Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00490 ATGAATTCTCCAACTACTTCCGATGCCGTTACGGCGGCGGAGTCTCTCTCCGACCACCGCGGAATCAGCATGTCAAATACTATCCACTCCGAAGTCGCCTCTTACTTGCGGTTACCTTCACTTCCGGTTTTCTGCGGAGCTTCCGATCAAGACCTACGACTCTTCGATTCACCGTTGCTGTTGGACCGCGTCGATATTCTCTCGCAGTCTAGCAAGATCGCTGAGATGCTCCGAAACACTGATGTTTCGTACCTGAATTTAAGAGATGATGCCAAGGCTGTTCCGTATAACTACGTTGAGCCTTTAGAACTCCATGATCAAGTTCTCAGGTGCAATCCTGAAGCATTTGAATGCAGTACTGCAGGTCCTGTCAAGGAGAAGATCTCTGGTAGTGCATTACCTGAAAAGAAGCTTGCTGAATCAAATTTTTCTGTCCCGAGTCAGACTCAAAAGGACTATAATGCAACACATAGCCGACAGCTTGATAATTTTTCTACAAATGACATTTCTACATTGTCTTCTAAGAAATCAAAAGTTAAGAAGAAAGCTGGTAACGGATTATCTATTGCACCCGACCCTGCTGAGCTTCAAGATGCTAGCATTGGAAGATTTCGCGAGTTTTTGGAGGACTTATGTAGCAAGGCTGAATCGAATAGTGATCATCTAGATGAAACAGTAGAATGGTTGCCATTGCCACTTTCAGATCTTAGAACGCTTGTTAATGAAATAATGACTATACGTGAGAAGAAACTTTTGCATTTGGTCCCTGTAGAACTCCTTGTTAGACTGCTAAAGGTTTTAGATCATCAGATACACAGAGCAGAAGGCCTGTCAATCGACGATTGTGACAATTCCAATTCAGAACAAGTTTCATCTCTTTTAGCTGCGATGGAATCCATTCATGCTGCACTGGCGGTGATGGCTCATACTGACATGCCAAAACAACTTTATAAAGAAGAGGTCATTGAGAGAATTCTGGAGTTTTCCAGGCATCAGATAATGGATGTGATGTGTGCATGTGATCCTTCATACCGTGCGTTATACAGACCTAGTGAAAACACTGGATTTGAAGTTGATGATGAAGAATATGATGCTGAATTTGGTTCAGCAAGCAAAAAACGACGAACTAGCAGCAAGACTGTGAAGTTGAAGAAATCAGCATCAAGCAGGTTCTCTAGTGCTGTGAATGTTATTCTTCAGAAGTTGTGTACTGTTCTTGGACTACTCAAGGATTTGTTGTTAATAGAGAGGTTGTCAGATAGTTGCATTTTACAACTTGTAAAAACAAGCATTTCAACATTCTTGGTTGATAACATCCAGCTCTTGCAATTGAAGGCAATTGGTTTACTCAGTGTGATATTCTATTTATACACACAACATCGCACTTATGTGTTAGATGAAATGCTTCATCTTCTTTGGAAATTACCGCATTCAAAGCGAGCTTTAAGGAATTATCACATACGTGAGGAAGAGCAAAGACAGATCCAAATGATTACTGCTTTGTTGATCCAATTAATTCATTGTAGTGCTAACCTTCCTGATACTTTAAGACAAGCATCAAGTGGCAACTCTGTATTGGAAGTCTCGGTTGATGCTAGTTATCCAACTAATTGCCGCGATGCAGTAAGAGAGGCCTGCTGTCTATTTTGGAGCCGTGTACTTCAGCGAATTGCAAGTGCAAAGACTCAGGATGCTTCTGAACTGAAATCCATAATGGAGAATCTTGTTACTGATTTACTGACCACTCTAAATTTACCCGAATATCCTGCTTCAGCTTCTATTCTAGAGGTTCTATGTGCCATACTAATTAATAATGCTGGGTCAAACTCCAAGGATTTCGCTGCACGTTCCATGGCAATTGATATTCTTGGCACTATTGCTGCAAGGTTGAAGCGTGATGCTGTGATTTGTAGCCGGGAAAAGTTCTGGGTACTTCAAGATTTACTTGGTGAGAATGCCGCTCCTCGTCATCATCCAAAAGATACATGTTGTATCTGTTTGGGTGGAAGGATTGAAAATTTGTTCATATGTTCCGGCTGCAGTAGGCTTTTTCATGCTGACTGCCTGGACATAAAAGAAAATGAAGTTCCCAACCGGAACTGGTACTGTCATATGTGCATCTGCTCAAAGCAACTGGTTGTATTACAATCATATTGCAATTCCCAGCGCAAGGATGATGTAAAAAAGAATCGTAAAGTGTCAATGGATGATTCTGCATTTTCTAACCATGAAATTGTTCAACAATTGCTTTTGAATTACCTTCAAGATGTCACCTCCGCTGATGACCTGCATATTTTCATTTGCTGGTTTTATCTGTGCGCATGGTATAAAAATGATCCAAAATGTCAGCAGAAGCCCATTTACTACTTTGCTAGGATGAAATCAAGAACCATAATACGGGATTCTGGTACTGTTTCTTCTATGCTGACGCGAGATTCAATCAAGAAGATTGCTCTAGCTTTAGGCCAAAAAAGTTCATTTAGTCGAGGCTTTGATAAGATTTTTCATACGCTTTTGGTAAGTTTGAAGGAGAACTCTCCAGTTATTAGGGCTAAAGCTTTACGAGCAGTTAGCATCATTGTAGAGGCTGATCCAGAGGTATTGGGTGATAAACAAGTTCAAACATCCGTTGAAGGTAGGTTCTGTGACAGTGCAATATCTGTTAGAGAAGCAGCATTGGAACTTGTTGGTAGGCATATTGCTTCACATCCAGATGTGGGTTTTAAGTATTTTGAGAAGATTACAGAGAGAATCAAAGATACTGGAGTGAGTGTTCGAAAACGAGCCATAAAAATTATTCGAGATATGTGCAGCTCAAATGCCAACTTCTCTGAGTTTACAAGAGCCTGCACAGCGATAATATCACGTGTTATTGATGATGAATCCAGTATCCAGGATCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAGGAGCCTTCTGCTTCACAAACTCAGGTCTTTGGAGATGGTAGTACTGTTCCACTTGAGGTAGCTAAGAAAACAGAACAAATTGTTGAAATGTTGAAGAGACTGCCCAATAATCAGCTTCTTGTAACTGTAATAAAGCGCAACTTGACACTTGATTTTTTACCACAATCTACAAAAGCAATTGGGGTCAACCCAGTGTCCCTTGTAACAGTGCGTAAGCGTTGTGAGTTGATTTGCAAATGCTTGCTGGAGAAGATATTGCAGGTTAACGAAATGAACAGTGTTGAAGTGGAAAAGCATGTGCTTCCGTATGTGCTAGTCTTGCATGCATTTTGTCTTGTGGACCCAACTCTCTGTGCACCAGCTTCTAACCCTTCGCAGTTTGTCATGACTTTGCAGCCATATCTAAAGACTCAGGTTGACAATAGCATGGTCGCACAACTACTTGAGAGTATAATATTTATAATTGATGCTGTGTTGCCATTGCTGCGTAAGTTACCTCCGAGTATTGTGGATGAACTTGAGCAAGATTTGACGCAGATGATTCGCCGACATTCGTTCTTGACAATTGTCCATGCTTGTATCAAGTGCCTCTGCAATATGAGTAAAATTGCTGGGCAAGGGGCTACTGCAGTCGAGCATCTTATTCAGGTCTTCTTCAAATGTTTGGAAGATACCCAGGCAGTTGTAAACAACCAGCAAGTTGGGCGATCTCTCTTTTCTCTTGGTTTGCTTATTCGTTACGGAAACTGTTTGTTTGCAAGCTCTGGTAATGAACTTGTTGATGTCAGAAGGAGTCTCGGCTTGGTTATGAAGTATCTTGGTGTGGAGGATTGTTCTCTCCAGGTTAGATCATTGCAGGCACTAGGATATGTTCTAATTGCAAGGCCTGAATATATGTTAGAAAATGACATTGGAAAGATACTGGAGAGAACATTGTCTAGCGTTGCTAATGAACGGCTAAAGATTCAAGCATTACAAAATATGTTTGAGTATCTTCTTGATGCTGAAAGCAAAATGGAAACAGACAAAGTTGATGGTAATGTACCTGGTCACTTGGTCGGGGCTGGGCAGAGTGTACCTGTTGCTGCTGGTGCTGGGGATACAAACATATGTGGGGGTATAATTCAGCTGTACTGGGATAATATTTTGGGCAGATGTTTGGATTTGAACGAACATGTTCGACAAACAGCCTTGAAGATTGTTGAAGTTGTGTTGCGCCAAGGTCTTGTTCATCCCATCACCTGTGTTCCACATCTTATAGCACTAGAAACAGATCCTCTGGAGTCAAATTCAAAGTTGGCTCATCTTCTCCTAATGAATATGAATGAGAAGTACCCTGCATTTTTTGAAAGTCGATTGGGTGATGGACTTCAAATGTCGTTTATGTTCATGCAATCTATTTGTGTCAGTCCTAATGAAAATGTTAACCACAAGACCCAATCTAAGATCCCTGTTTCTGGAAAAGGGAAGCCTCAGGCTGACTCACTCACTCAATCAAGAGTTGGGGTTTCTCGAATATACAAGCTCATCCGAGGGAACCGGATATCGAGGAACAAATTTATGTCCTCAATTGTGCGAAAATTTGATAATCCAAGATGCAACAAATTTGTAATAGGTTTCTTAATGTATTGCACAGAGGTCCTTGCCTTGCTTCCCTTCATTGCACCCGATGAACCACTTTATTTAATCTATGCTATTAATCGAGTAGTTCAGGTTAGGGCTGGTCCGCTGGAGGCGAACTTCAAAGCCTGGAGTTCAAGCTTGTTACGAAGTGAGGGTGACAGTACACCTCATGGGAATGGAATGTATCCACAGGCACCAAATGAATCTATTCATACAACCCAAGTCCAGTCAGTGGACTTAAATGGCACATTTCAGCAAAATGTAGATGTTCAGCCCTTCCTCAATGATATGACATCAGTGGATTTAAATGGAACAAATCACCAATTACCAGATTATCCTTTATCACATAATGGTAGATCAAAAGTAAAGCTACATGCTGCAGGTTTTGCAAATTCCTTTACCTTCTCAAAAGATGATCTGGAGAAAATTCAGGCCGACTGTTTATCTGCAATTGCATTGCAACTTCTTTTGAAGTTAAAGAGACACCTAAAAATCATGTATAGTCTCGATGATGCCAGATGTCAGGCTTATTCTCCAAGCGAACCACCGAAACCTGGAGATGTTTTTTCAAGACAGAATGTTCCATTTAATATTGGTGAATCTCAGTTCAGTTTGCCTACATGTCCACAAGAATTAATACAAAGATATCAGGAGTTTAAGAATGCATTGAAGGAAGACACAGCGGATTATTCACTCTACACAGCAAATATAAAACGAAAGCGACAAACACCCAGAAAAGTTCGGAAATCTGGACCGATGGCAGGTGCTAATATTGATGAGGACGACGATGAGGAATGGGCTGGTGGAATGCGCAATATAAATTTTAGTGGTGGCCGCAGAACTAGCCTTAGAAACTCCAGACAATACTGA 5427 0.4096 MNSPTTSDAVTAAESLSDHRGISMSNTIHSEVASYLRLPSLPVFCGASDQDLRLFDSPLLLDRVDILSQSSKIAEMLRNTDVSYLNLRDDAKAVPYNYVEPLELHDQVLRCNPEAFECSTAGPVKEKISGSALPEKKLAESNFSVPSQTQKDYNATHSRQLDNFSTNDISTLSSKKSKVKKKAGNGLSIAPDPAELQDASIGRFREFLEDLCSKAESNSDHLDETVEWLPLPLSDLRTLVNEIMTIREKKLLHLVPVELLVRLLKVLDHQIHRAEGLSIDDCDNSNSEQVSSLLAAMESIHAALAVMAHTDMPKQLYKEEVIERILEFSRHQIMDVMCACDPSYRALYRPSENTGFEVDDEEYDAEFGSASKKRRTSSKTVKLKKSASSRFSSAVNVILQKLCTVLGLLKDLLLIERLSDSCILQLVKTSISTFLVDNIQLLQLKAIGLLSVIFYLYTQHRTYVLDEMLHLLWKLPHSKRALRNYHIREEEQRQIQMITALLIQLIHCSANLPDTLRQASSGNSVLEVSVDASYPTNCRDAVREACCLFWSRVLQRIASAKTQDASELKSIMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLGENAAPRHHPKDTCCICLGGRIENLFICSGCSRLFHADCLDIKENEVPNRNWYCHMCICSKQLVVLQSYCNSQRKDDVKKNRKVSMDDSAFSNHEIVQQLLLNYLQDVTSADDLHIFICWFYLCAWYKNDPKCQQKPIYYFARMKSRTIIRDSGTVSSMLTRDSIKKIALALGQKSSFSRGFDKIFHTLLVSLKENSPVIRAKALRAVSIIVEADPEVLGDKQVQTSVEGRFCDSAISVREAALELVGRHIASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCSSNANFSEFTRACTAIISRVIDDESSIQDLVCKTFYEFWFEEPSASQTQVFGDGSTVPLEVAKKTEQIVEMLKRLPNNQLLVTVIKRNLTLDFLPQSTKAIGVNPVSLVTVRKRCELICKCLLEKILQVNEMNSVEVEKHVLPYVLVLHAFCLVDPTLCAPASNPSQFVMTLQPYLKTQVDNSMVAQLLESIIFIIDAVLPLLRKLPPSIVDELEQDLTQMIRRHSFLTIVHACIKCLCNMSKIAGQGATAVEHLIQVFFKCLEDTQAVVNNQQVGRSLFSLGLLIRYGNCLFASSGNELVDVRRSLGLVMKYLGVEDCSLQVRSLQALGYVLIARPEYMLENDIGKILERTLSSVANERLKIQALQNMFEYLLDAESKMETDKVDGNVPGHLVGAGQSVPVAAGAGDTNICGGIIQLYWDNILGRCLDLNEHVRQTALKIVEVVLRQGLVHPITCVPHLIALETDPLESNSKLAHLLLMNMNEKYPAFFESRLGDGLQMSFMFMQSICVSPNENVNHKTQSKIPVSGKGKPQADSLTQSRVGVSRIYKLIRGNRISRNKFMSSIVRKFDNPRCNKFVIGFLMYCTEVLALLPFIAPDEPLYLIYAINRVVQVRAGPLEANFKAWSSSLLRSEGDSTPHGNGMYPQAPNESIHTTQVQSVDLNGTFQQNVDVQPFLNDMTSVDLNGTNHQLPDYPLSHNGRSKVKLHAAGFANSFTFSKDDLEKIQADCLSAIALQLLLKLKRHLKIMYSLDDARCQAYSPSEPPKPGDVFSRQNVPFNIGESQFSLPTCPQELIQRYQEFKNALKEDTADYSLYTANIKRKRQTPRKVRKSGPMAGANIDEDDDEEWAGGMRNINFSGGRRTSLRNSRQY 1808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00490 1808 ProSiteProfiles Zinc finger PHD-type profile. 660 709 IPR019787 -
Trre12g00490 1808 FunFam Sister chromatid cohesion protein 812 980 - -
Trre12g00490 1808 Pfam HEAT repeat associated with sister chromatid cohesion 855 896 IPR026003 -
Trre12g00490 1808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 717 IPR013083 -
Trre12g00490 1808 PANTHER NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED 21 181 IPR033031 GO:0003682|GO:0010468|GO:0061780
Trre12g00490 1808 MobiDBLite consensus disorder prediction 1760 1783 - -
Trre12g00490 1808 SMART PHD_3 662 707 IPR001965 -
Trre12g00490 1808 SUPERFAMILY ARM repeat 744 1279 IPR016024 -
Trre12g00490 1808 Pfam Sister chromatid cohesion C-terminus 1349 1547 IPR024986 -
Trre12g00490 1808 Gene3D - 833 1210 IPR011989 -
Trre12g00490 1808 SUPERFAMILY FYVE/PHD zinc finger 657 715 IPR011011 -
Trre12g00490 1808 CDD PHD_SF 662 706 - -
Trre12g00490 1808 ProSitePatterns Zinc finger PHD-type signature. 663 706 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00490 Trre-Chr12 3929235 3941645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00490 661 708 PHD Transcription Factor Family AT5G36670 47.917 1.52e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00490 K06672 - gmx:100792021 2791.14