Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00433 ATGGTTCTAATTGATGAAAAGGGTGGAAAGATTCATGCTTCCATTAAAAAGCAGCTGATGTATATGTATGAATCCAAGCTCAAGGCGGGGCAGACTAAATTAAACCCATCAGAGGGTGCTGGTATATCTGAGTTTGGTCTAACCTTCACTAAGATTGATGAAATATGTGCCCATACTCATGATTATGAGTACCTGGTTGATGTTATTGGTGTTGTGACTGGTATGTCCGCTGAGAGAGAGTATGTTAGGGATGGCAAGATCACTAAGATGATCATTGTTGAGCTTACTGATCATAGCGGTAAGTGTGAATGTGCTTTGCTTGGTGATAACGTTGATGAGTTGAATAAGAAGATTGGGAAATCTGTTGTTGGCTTGCCAATTGTTGTCATTCAGTTTGCCAAAGTTAAGATTTTTAGAGACAAGGTATCCATCCAGAATGTGATTCACACTACTAGGATTTTTGTTAATCCAGATATTCCTGAGATTGTTCAATGTATCTGGTCGAATTGCATATTTACTTTGCGGGTGATTCAGGTGAAACAAAAATCAATAAAGTGA 558 0.3835 MVLIDEKGGKIHASIKKQLMYMYESKLKAGQTKLNPSEGAGISEFGLTFTKIDEICAHTHDYEYLVDVIGVVTGMSAEREYVRDGKITKMIIVELTDHSGKCECALLGDNVDELNKKIGKSVVGLPIVVIQFAKVKIFRDKVSIQNVIHTTRIFVNPDIPEIVQCIWSNCIFTLRVIQVKQKSIK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00433 185 CDD RPA1_DBD_B_like 67 162 - -
Trre12g00433 185 SUPERFAMILY Nucleic acid-binding proteins 47 164 IPR012340 -
Trre12g00433 185 Gene3D - 47 169 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00433 Trre-Chr12 3638222 3640039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00433 33 161 Core DNA Replication Machinery Family AT2G06510 30.827 1.55e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00433 - - tpra:123893580 227.254