LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00428	ATGGCGAGTGAAAGTGCTGAATTACTGGTTACCTCGGATATAACTAAGTCACCTAAGGTTAAAGTAAGAAGGAACTCTGCCGGCGGCAATGCTAGCTCGGGAAATGGCGATGAAAAAGTTGTTCCTAACTATCTCAGAGCTTCCACTGGTTCCTGTCATGATTTGTGTAAATATGGGAGGGAGCATGCATTTGCATCGAAGGAAAGACGATCTATACCGAATAGAGCTACAAGAAAAAAACTTCATCAAAGTTCGGAAGAGGGCATCGGTCAGGTGATTGCCAGGTCCAAACCACCCGTTGATTCCAAGCCAACAAAGATGCCGACAGTTGTACTCAAAGAATCCGTTGATTCCAAGCCAACAAAGATGTCGACCGTTGTACTCAAAGAATCGGTTGATTCAAAGACTCAGGTTCCTGATGCCTTAGATACCAATGAACACAAACTTCCATCGAAATCATTTGATAGCCAAAAACACGTTGCAAATGAAGTTAAGGCAAACAGGAAGAAAACATCGTCAGCCGAGGTCAAACCATCACTCCTTCTAAATTCTCGTACTTCTCCATCGACAAGTCAAGAAATTTCATCATCAACTGATAAGGAGGTGCAATCACAATCAAAATCAATTCCCAAGAAGGTGGAAAATACATCAAAACCAACTTCCAAAGTCAAAATTTCATCAAAATCAACAGAAGGTTCGGTCGAAGCTGTGTCAAAATTGACTCTCAAAAAGGTTGAAAATACTTCCAAAGTCAAAACTTCATCAAAATCGACTTCCAAGATCTCGGGAGCTTCACCGCAGCTATCTTCTTTAAATGGTAAAGAAATGAAGTTGTCAGCAAAACATTCGACACCTTCGAATTCAAATCGCATTGCAAAGAAGAAAGTATCTTCCTCTATGAATTCCTCAGAAGGCTTTGATGACAAAATAATTAATGGGATCAAGACAGAGAATAAAGTAGCCTCCTCCAAAACAGCTTCAAGAAAACCAATAGCACCTATAAAAGCTTTATCATCTCCAAGAGCTTCTCTTAAAAGAGTTTCAAGTCTAAATTCAAGAAAGCACAATGGCCTCAAAATTGTGTCACATCTTAGGAATCAGAAGACTGCAAAAGAAGATGAGCTCGAAGAACACAACAATAACACCACCACCACCACCAACAACAACAACATCAACGACGACAACAACAACGAGGTGGAGGAAAAGACTTTGTACGTCATCAAGACGGAAAGTGAAAACAAAACTGCGGAATCTGATCAAACTGCAAGCTACGATGATGAGCCGTACCTCCCTCAGTTGTCCACACCTATGTCTTCGTCAACCTCAGTTACTCGATCCTTATCTGACGAAGACGAGGAATCTGAATATACAACTAGTGAATTTGAGGTGGATTCTTTATCGGGAAACTGTGAAATCGAATGCATGGAAAACGAGGAGGCTTTAAAAGTCGAGAAGAAAGGCAAGCCGAGAAAGGTCAAGGAAGTTGAAGACAAGGACTGCGAAATGATAAAACTGAAGTTCAGAAGAGGGAAAGTGGTTGATAATAAAATTGAGAAAAATACTCCAAGGAGGCTTACATTTCGGAGAGCGAAAATGTTGGCAGAGAAAGCAAATGTTAACGATGACGGCGAAAGGAAAAGCTATAAAAAAAGAGATGAAGCATGTAGTGAGAGCAATGATGGTGCCAATGGTCAAGAGAAAGTTGTTTTGAGACACCAAGATGTCGAGGATAAGAAAGATGCACAAGGATTGTTTAACAATGTTATCGAGGAAACGGCAAGTAAACTTGTTGAAGCTAGAAAGAGCAAGGTTAAAGCATTGGTTGGTGCATTTGAAACTGTGATTTCTCTTCAAGACAAAAAACCTTCTACAAACATAGTTAGTTGA	1887	0.4028	MASESAELLVTSDITKSPKVKVRRNSAGGNASSGNGDEKVVPNYLRASTGSCHDLCKYGREHAFASKERRSIPNRATRKKLHQSSEEGIGQVIARSKPPVDSKPTKMPTVVLKESVDSKPTKMSTVVLKESVDSKTQVPDALDTNEHKLPSKSFDSQKHVANEVKANRKKTSSAEVKPSLLLNSRTSPSTSQEISSSTDKEVQSQSKSIPKKVENTSKPTSKVKISSKSTEGSVEAVSKLTLKKVENTSKVKTSSKSTSKISGASPQLSSLNGKEMKLSAKHSTPSNSNRIAKKKVSSSMNSSEGFDDKIINGIKTENKVASSKTASRKPIAPIKALSSPRASLKRVSSLNSRKHNGLKIVSHLRNQKTAKEDELEEHNNNTTTTTNNNNINDDNNNEVEEKTLYVIKTESENKTAESDQTASYDDEPYLPQLSTPMSSSTSVTRSLSDEDEESEYTTSEFEVDSLSGNCEIECMENEEALKVEKKGKPRKVKEVEDKDCEMIKLKFRRGKVVDNKIEKNTPRRLTFRRAKMLAEKANVNDDGERKSYKKRDEACSESNDGANGQEKVVLRHQDVEDKKDAQGLFNNVIEETASKLVEARKSKVKALVGAFETVISLQDKKPSTNIVS	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00428	628	SMART	CaM_binding_2	501	616	IPR012417	GO:0005516
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	539	567	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	118	132	-	-
	Trre12g00428	628	Pfam	Plant calmodulin-binding domain	504	616	IPR012417	GO:0005516
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	411	462	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	140	172	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	425	445	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	539	557	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	380	394	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	1	41	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	67	307	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	251	306	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	365	379	-	-
	Trre12g00428	628	Coils	Coil	361	381	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	319	398	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	173	244	-	-
	Trre12g00428	628	PANTHER	EMB\|CAB62594.1	17	263	-	-
	Trre12g00428	628	MobiDBLite	consensus disorder prediction	342	356	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00428	Trre-Chr12	3616696	3618582	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00428	566	614	Calmodulin-binding Proteins	AT2G38800	46.000	2.46e-06	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00428	-		-	mtr:25495325	757.673