LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00424	ATGGCGACTGCGAAACCTCAACGAACTCCACAGGAAGTGGAAGACATAATCATCCGCAAAATCTTCCATGTAACAATCACCGGAGAATCAACAACCACCACCGGAGCAACCGATTCGAGAATCGTTTATCTCGAACTAACCGCCGCAGAGATTCTCAGCGAAGGAAAAGACCTTCTCCTTTCTCGCGATGTTATGGAACGAGTCCTCATCGATCGTCTTTCCGGCAATTTCCCCGGCGCCGAAAACTCACCGTTTCAGTATCTTCTCGGTTGTTACAATCGAGCTCACGATGAAGCGAAGAAAATCGTTAACATGAAGGATAAAAACCTTAGGTCAGAGATGGAAACTGTTGTAAAGCAAGCGAAGAAACTCTGTGTTTCGTATTGTAGAATTCATCTCGCGAATCCTGAGCTATTCGCCAGTCAGAATTCAAATTCCGGCACCGGAAGGTCTCCGTTGTTGCCGCTGATTATATCAGAGTGTGGTGGAGGCGGTGGAATGGGGGTTTTTGGTAGTGGTAGTGATACAGGAGGAGTGAAAAGTCCTCCAGGGTTTTTAGATGAGTTTTTTAGGGATCCTGATTTTGAAAGTTTAGATGGAATTTTGAAAGGGTTGTATGAGGAATTAAGAGGGAATGTGATGAGAATTTCTGTTCTTGGAAATTTTCAGGATTCTCTTAGGGCTTTGTTGTTTTTGGTTAGGTTACCTGTTGGTGCTAAGTCTCTTGTGAGCCATGAATGGTGGATTCCTAAAGGTGTTTATATGAATGGTCGTGCTATCGAAATGACTAGTATTTTGGGTCCTTTTTTCCATATCAGTGCTCTTCCTGATCAAACCCTCTTCAAGAGTAATCCAGATATTGGGCAGCAGTGCTTTTCTGATGCGTCAACTCGGCGACCATCTGATTTATTATCTTCATTCACCACCATTAAAACTGTCATGAATACCTTATATGATGGTCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGACACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATCTAAATGCATCCAGGGCTCATATACAGGTTGACCCGATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCAGTCATGCTTCGCCTCTGCGAACCATTTTTAGATGCAAATCTAACAAAAAGGGATAAAATTGATGCCAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGGTTTGACTGCCCTTCACGCGTCATCAGAAGAAATTACTGAATGGCTTGATAGTAAAAACCCAGCTAAGGCAGGGGAAATGAATCAATGTAATGATGGTGAGAAACGTCTGAAACAATCTCAAGAGGCCAGCAGTTCTGGTAGTAATAATGCCAGTGCAAAATATTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGGCTTTTAAAAGCATTTTCTGATTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAAGATACTCTTGCCACACTTAAAAACATGCAGGGACAGTCACCTTCTCCTCAATTGGAACTGGATATAACTCGACTTGAGAAAGAGCTTGAGTTGTATTCCCAGGAAAAACTTTGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCACTTTCGTTCTACCGCTTGATGATCGTCTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCACCAACATGCCCAATGGAATTTTCTACCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCTCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATAATGTTCATGGGCAGCCCTGATTTTATTAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTTCTGAACAACTGGATGCCTCGTAGGAGTGGATCATCTGCTACAGCTACTCTATTTGAAGGGCATCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTTGAATACCTGTGGAATGTCCCCAGTCATCGTAGTGCTTGGAGACAGATTGCTAAAGAGGAAGAAAAGGGTGTCTATCTCAATTTCTTAAACTTTCTCATTAATGATAGTATTTATCTTCTCGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACTGTCGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCGAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTTCTTCCTGAGATGGTTGATAGAGTGGCCAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGCCCCCAAAGAAAATCGCTCAGCCTGAAAGATCCTGAAAAATATGAGTTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGCGACACAAATTCCATCTTCCCATCTGCCATATCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGCTCTGCTGCAGACGTCCTTCGTCGAATTGGCGAGGATGGAAGAATTATACAGGAATTTATTCAGCTCGGTGCTAAAGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTGGATCCAATTCAATATACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAAGACTACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTACTGATCCATTCAACCGTTCTCATCTTACCGCCGATATGCTGATACCTGATGTCGAACTCAAAGCAAGAATTGAAGAGTTTATCAGGTCTCAGGAAATGAAGAAACACAGCGAAGGCCTAAGCATGCAAAGTAATAAGGCCACCATTCAACCCACAAATGCTGATATGTTGATTGATTAG	3102	0.4197	MATAKPQRTPQEVEDIIIRKIFHVTITGESTTTTGATDSRIVYLELTAAEILSEGKDLLLSRDVMERVLIDRLSGNFPGAENSPFQYLLGCYNRAHDEAKKIVNMKDKNLRSEMETVVKQAKKLCVSYCRIHLANPELFASQNSNSGTGRSPLLPLIISECGGGGGMGVFGSGSDTGGVKSPPGFLDEFFRDPDFESLDGILKGLYEELRGNVMRISVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTLFKSNPDIGQQCFSDASTRRPSDLLSSFTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEITEWLDSKNPAKAGEMNQCNDGEKRLKQSQEASSSGSNNASAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKNMQGQSPSPQLELDITRLEKELELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFSTMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRSAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSKTTVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHSEGLSMQSNKATIQPTNADMLID	1033

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00424	1033	SUPERFAMILY	RING/U-box	927	1006	-	-
	Trre12g00424	1033	ProSiteProfiles	U-box domain profile.	934	1008	IPR003613	GO:0004842\|GO:0016567
	Trre12g00424	1033	PANTHER	UBIQUITINATION FACTOR E4	3	1011	IPR045132	GO:0000151\|GO:0030433\|GO:0034450
	Trre12g00424	1033	MobiDBLite	consensus disorder prediction	430	458	-	-
	Trre12g00424	1033	CDD	RING-Ubox_UBE4A	937	1005	-	-
	Trre12g00424	1033	FunFam	Ubiquitin conjugation factor e4 a	934	1012	-	-
	Trre12g00424	1033	Pfam	U-box domain	935	1006	IPR003613	GO:0004842\|GO:0016567
	Trre12g00424	1033	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	934	1013	IPR013083	-
	Trre12g00424	1033	Pfam	Ubiquitin elongating factor core	266	918	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Trre12g00424	1033	Coils	Coil	513	540	-	-
	Trre12g00424	1033	SMART	Ubox_2	938	1001	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00424	Trre-Chr12	3576029	3582924	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00424	1	1033	U-box Gene Family	AT5G15400	75.859	0.0	1625

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00424	K10597		-	gmx:100806175	1736.47