Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00421 ATGGAAGGAACAAAGAAGAGAGTGTTTGGTTCATCAATTTCACCAACAATGGTGTTTCTATTTCTGGGTTTTGCTATTCTTTTCATTTTACCAATGGCATCAGCTGCAAAAGTTACAGTTGGTGGTAAAATGGGTTGGACCACAAATTTCAATTACACTCTTTGGGCTAAGGATAAGCATTTCTACAATGGTGATTGGCTTTTTTTTGTGTATGATAGGAACCAACAAAATGTACTAGAAGTGAACAAAACAGATTATGAAAGTTGCAACTCAGATCATCCACTTCACAATTGGACAACCGGAGCCGGAAGAGATGTCGTTCCATTGAACGTGACTCGCCATTACTATTTCATAAGCGGCAAAGGATTTTGCTTTGGTGGAATGAAACTTGCTGTTCATGTTGAAAATCTACCACCACCACCAAAAGCTTCACCTATAAAATCTTTTGCACCAACCCTTTCTTCTAAAGGACATATCTTTCTCATGCCTATTGTTTTTGCTATTGGTGCAGCTTGGGATTCATTCATTTATTTATGGTAA 540 0.3778 MEGTKKRVFGSSISPTMVFLFLGFAILFILPMASAAKVTVGGKMGWTTNFNYTLWAKDKHFYNGDWLFFVYDRNQQNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCFGGMKLAVHVENLPPPPKASPIKSFAPTLSSKGHIFLMPIVFAIGAAWDSFIYLW 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00421 179 PANTHER BLUE COPPER PROTEIN 35 141 IPR039391 GO:0009055
Trre12g00421 179 FunFam Lamin-like protein 34 137 - -
Trre12g00421 179 Pfam Plastocyanin-like domain 46 128 IPR003245 GO:0009055
Trre12g00421 179 Gene3D - 34 137 IPR008972 -
Trre12g00421 179 SUPERFAMILY Cupredoxins 35 134 IPR008972 -
Trre12g00421 179 ProSiteProfiles Phytocyanin domain profile. 36 136 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00421 Trre-Chr12 3559660 3561772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00421 20 179 Phytocyanin Superfamily AT5G15350 53.704 4.84e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00421 - - mtr:11412511 326.25