Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00418 ATGGAAAATTCATCAAGAGTGATGTTGATGATGAGTGTGATGGTTTTGGGAATGTTGTCATTGTGGCCAATGGTGGTGATGGGAAAACCAGTGCTTCATAAGGTGGGAGGATCCAAAGGTTGGAATGAAAATGTCAATTACACTATATGGTCTTCTCAACAGCATGTTTATGTTGATGATTGGCTAATTTTTAAGTTTGACAAAAGATACTACAATGTCTTGGAAGTGAACAAGACATGCTATGAGGATTGCATAGATACTACCTTCATAAAAAATGTGACTCGGGGAGGTCGTGACGTGGTTCAGTTGACAGAGGCAAAAACATATTACTTTCTCTCTGCCGGAGGTTATTGCTTTCATGGAATGAAAGTTGCCGTAGACGTTCAAGAACACCAAATAGATGCACCATCTCTATCTCCATCGGCTTCGATGAAATCTGGTGTTGGTTCTATTTTGCCATCAATGTACACATCCTTTGGAATTATTATTGCTAATGTGGTTTATGTAAGTTTGGTTTCAATGGGGATATTGTAA 534 0.3876 MENSSRVMLMMSVMVLGMLSLWPMVVMGKPVLHKVGGSKGWNENVNYTIWSSQQHVYVDDWLIFKFDKRYYNVLEVNKTCYEDCIDTTFIKNVTRGGRDVVQLTEAKTYYFLSAGGYCFHGMKVAVDVQEHQIDAPSLSPSASMKSGVGSILPSMYTSFGIIIANVVYVSLVSMGIL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00418 177 PANTHER BLUE COPPER PROTEIN 32 135 IPR039391 GO:0009055
Trre12g00418 177 Pfam Plastocyanin-like domain 41 122 IPR003245 GO:0009055
Trre12g00418 177 FunFam Lamin-like protein 29 131 - -
Trre12g00418 177 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Trre12g00418 177 Gene3D - 32 138 IPR008972 -
Trre12g00418 177 ProSiteProfiles Phytocyanin domain profile. 31 130 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00418 Trre-Chr12 3543140 3545976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00418 24 163 Phytocyanin Superfamily AT2G27035 41.135 8.86e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00418 - - gmx:100788336 214.542