Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00414 ATGATGATTTCGATTTCAAAAAATGTGTTATTTATTTCTTTGTTACTAACTGTTGTTGTTGCTTTACAGTTCAAAGAGGGTGAAAGTGACGTTTTCCACAAGCCAAGAGTAACTGTTTTTATTACCAATGTTTTACCTAATCGTCAACTAAGGCTTCATTGCAAAGACAAAAACAATGATCTTGGGGAGCAACTACTAAAAGTTGGACAAAGTTTCTCATTTTCATTTAAACCTAGTTTTTGGGGAGTTTCCTTATACTTTTGTCAATTTACATATTTTGGAGGGCATCATTACTTTGATATTTATGTTGAAAATAGAGATGTAGATAATTGCAAACATGAATGTCATTGGAAAATAAAGTTAGATGGACCATGTAAGGAACCATCTCCAACTGAAGAAGAATGTTTTTCTTGGAATAAAGATGATTCAGAAAGAAGACATCTTGGTGAAGAGAATAATAATAATAATAATGAGAAAAATATTGTGTAA 489 0.3067 MMISISKNVLFISLLLTVVVALQFKEGESDVFHKPRVTVFITNVLPNRQLRLHCKDKNNDLGEQLLKVGQSFSFSFKPSFWGVSLYFCQFTYFGGHHYFDIYVENRDVDNCKHECHWKIKLDGPCKEPSPTEEECFSWNKDDSERRHLGEENNNNNNEKNIV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00414 162 Pfam Plant self-incompatibility protein S1 39 138 IPR010264 -
Trre12g00414 162 PANTHER - 35 127 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00414 Trre-Chr12 3509480 3509968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00414 18 139 Carbohydrate Esterase AT3G16970 38.686 5.54e-24 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00414 - - tpra:123910178 220.32