Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00413 ATGGGTTGTATTAGTTCAAAACATGCTGCCAAAACATCTTCTCCTGCTCCGACAGTCGGAGAAATTGTCGACGTTGTTCCTTCATCAAAGGTTCATTCCGGTTTGTCGGTTTTGGAATCAAAATCATCATTAGAGGAAAATAAGAATAGAAAATTCAAGAAAAATAGCTCAAAGAAAAGTAGTGGTTCAGCATTCAGTTTCAGAATTGGATTTACACAAAGGTTTGTTGAAGCAGAACAAAATGCAGCTGGTTGGCCTCCGTGGCTTACAGCTTCTGCAGCTGAAGCTGTTCAAGGTTGGATCCCTCTCAAAGCTGATGCTTTTCAGAAGTTAGATAAGATTGGACAAGGTACATATAGCAGTGTTTTTCGAGCACGTGAAGTTGAAACCGGAAAAATGTTTGCTCTAAAAAAAGTGAGGTTTGACACATTCCAAGCTGAGAGTATAAGGTTCATGGCAAGAGAAATAACAATTCTAAGGAGGCTTGACCATCCAAACATAATGAAATTGGAAGGAATAATCACTTCTCGAATGTCAAATAGCTTATACCTTGTGTTCGAATACATGGAACATGATCTTGCTGGCCTAGTTTCTCGTCCTGATATTGTTTTCACCGATTCACAGATAAAATGCTACATGAGGCAATTATTAAGTGGACTTGAACATTGTCATGTACGCGGAATCATGCATAGAGACATTAAAGTATCGAATATCTTGTTGAACAATGAAGGTGTTCTTAAGATAGGTGATTTTGGATTGGCAAACACAATTAGTCCTAACAATAAGCATCAATTAACAAGTCGCGTAGTAACTTTATGGTATCGTCCTCCTGAGCTCTTGATGGGAGCAACCAATTATGGCGTATCAGTTGACCTTTGGAGTGTCGGATGCGTATTCGCAGAACTTTTTCTTGGAAAGCCTATTCTTAAGGGGAGAACCGAGGTTGAACAATTACACAAAATTTTTAAACTGTGTGGTTCTCCACCTGATGAGTTTTGGAAAAAGAGCAAGCTTCCTCATTCAACAATGTTTAAACCTCAGACTAATTACGAAAGCTCTCTTAAAGAAAAGTGCGCAGATTTTCCTGAATCGGCTATAGGTTTACTCGAGACTTTACTGTCCATTGATCCTACCAAGCGCGGAACCGCTTCCTCCGCTCTAATATCCGAGTATTTCAACACCAAGCCATATGCTTGTAATCCAGCAAACCTACCAAAGTATTCACCTAGCAAGGAAATTGATGCTAAAGGTCATGAAGAGGGTACTACTACATCCAGGAAAAAGACCGATAAAAGTCGAGAGGCTGCAACATCTAGAAGGCAACAAAGACGAGGCTATAAAGGTTACCAAGATGAGAACAATTTTGGTAAATCAACTTCAAAAGAGAACTTTTCTCATTATGCTAGAAAAGATGATGGTAAAGCTAATATACCAAAGGGAAAAGGAGGAAGTACTATTAGCAAAGATCACACAAAGACTACAATGGATGCAATGTTAGAGACTTCACAAAGATTGAATGTTGCAGATGGTAATGGCTATAGTGTACCAGTACAAGTCAAAGGAGGATCTAATGAATATTCATGGACAAAAAGAAGAAAACAAGATGCATCATCCACATTATCAGATGGATCAAGAAGTAAAATTAGTGCATTAGATCCTAACTTTGCAAAAGGCACTTATGATTTAACAAATCAAAGGGTTTCCATGGATTTTGATCCAAAAGAATTAAGGAATGCACAGGGACAAAGAGACGAACAAGGTACATATTGGAATGATGGTGTGCGGCGCGCAGCCCGTAAATCAAGGTTTGGAAGAGATCTATGA 1824 0.3887 MGCISSKHAAKTSSPAPTVGEIVDVVPSSKVHSGLSVLESKSSLEENKNRKFKKNSSKKSSGSAFSFRIGFTQRFVEAEQNAAGWPPWLTASAAEAVQGWIPLKADAFQKLDKIGQGTYSSVFRAREVETGKMFALKKVRFDTFQAESIRFMAREITILRRLDHPNIMKLEGIITSRMSNSLYLVFEYMEHDLAGLVSRPDIVFTDSQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGATNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPHSTMFKPQTNYESSLKEKCADFPESAIGLLETLLSIDPTKRGTASSALISEYFNTKPYACNPANLPKYSPSKEIDAKGHEEGTTTSRKKTDKSREAATSRRQQRRGYKGYQDENNFGKSTSKENFSHYARKDDGKANIPKGKGGSTISKDHTKTTMDAMLETSQRLNVADGNGYSVPVQVKGGSNEYSWTKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTNQRVSMDFDPKELRNAQGQRDEQGTYWNDGVRRAARKSRFGRDL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00413 607 SUPERFAMILY Protein kinase-like (PK-like) 103 397 IPR011009 -
Trre12g00413 607 Gene3D Phosphorylase Kinase; domain 1 95 190 - -
Trre12g00413 607 FunFam probable serine/threonine-protein kinase At1g54610 191 433 - -
Trre12g00413 607 MobiDBLite consensus disorder prediction 463 477 - -
Trre12g00413 607 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00413 607 MobiDBLite consensus disorder prediction 525 559 - -
Trre12g00413 607 MobiDBLite consensus disorder prediction 408 491 - -
Trre12g00413 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Trre12g00413 607 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00413 607 Gene3D Transferase(Phosphotransferase) domain 1 191 433 - -
Trre12g00413 607 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00413 607 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
Trre12g00413 607 MobiDBLite consensus disorder prediction 411 447 - -
Trre12g00413 607 CDD STKc_CDK9_like 108 392 - -
Trre12g00413 607 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Trre12g00413 607 PANTHER CELL DIVISION PROTEIN KINASE 106 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00413 Trre-Chr12 3502264 3506174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00413 100 442 Core Cell Cycle Gene Families AT5G10270 46.797 3.62e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre12g00413 Pkinase 4.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00413 - - gmx:100790917 874.389