Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00412 ATGGATGGCCCTGGTGGTGGAAATGTGAACACGGTTCTACAACATTATAAAATGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAAGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATTCTTAACCGCCGCAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCATCACATTATACGCCTTTATGAGGTTGTAGAAACAACTACAGACATATATGTGGTGATGGAATATGTGAAATCTGGAGAACTCTTTGATTACATAGTAGAAAAGGGTAGGTTGCAGGAAGATGAGGCTCGCAGTTTCTTCCAGCAGATAATCTCTGGTGTGGAGTACTGCCACAGAAATATGGTAGTTCATAGGGACCTGAAACCTGAGAATTTACTTTTGGACTCAAAATGGAGTGTGAAGATTGCTGATTTTGGCTTAAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATTATATGCTGGACCGGAAGTAGATGTTTGGAGCTGCGGTGTAATTTTATATGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAATATTCCCAACCTCTTCAAGAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATCTATCTCCTGGTGCCAGAGATTTGATACCGAGGCTGCTTGTGGTGGATCCCATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCATCTGCCGCGTTATTTGGCGGTGCCACCACCAGATACACTGCAACAGGCCAAAAAGATTGACGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGACAGGGAACAATTGATTTCGTCCCTTAGAAGCAGGGTGCAAAATGAGGGTACTGTAACTTATTATTTGTTACTGGACAATCGTTATCGCGTTTCCACTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTAGTTTGAACCGTATCCACTCCAGTGAAGTTGCTTCTCCAGTTGGTGGGCACCGTTTTTCAGGGTATATGGATTATCAAGGAGTAGGAATGAGGCAACAGTTCCCTGTGGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGGCTGAAGTCCTTAAAGCTCTGCAAGAATTGAATGTCTGTTGGAAAAAAATTGGACACTATAACATGAAGTGCAGATGGGCTGTGGTCATCCCTGGTCATCATGGAGGAATGGTTAACAATTCTGTGCATGGTAATAATTACCTTGGAGATGCCAGCATTATTGAGAATGAAGCTGCTGCTAAGTCAAGTATAGTCAAGTTTGAACTACAGCTCTACAAAACTCAGGAGAAATATCTGCTTGATCTCCAAAGGGTTGAGGGTGCCCATTTTCTTTTCTTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTTCGTGTTCTTTAG 1530 0.4261 MDGPGGGNVNTVLQHYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVVETTTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMTIPEIRQHPWFQVHLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFDREQLISSLRSRVQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDSSLNRIHSSEVASPVGGHRFSGYMDYQGVGMRQQFPVERKWALGLQSRAQPREIMAEVLKALQELNVCWKKIGHYNMKCRWAVVIPGHHGGMVNNSVHGNNYLGDASIIENEAAAKSSIVKFELQLYKTQEKYLLDLQRVEGAHFLFLDLCAAFLAQLRVL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00412 509 Gene3D Transferase(Phosphotransferase) domain 1 7 348 - -
Trre12g00412 509 PANTHER SERINE/THREONINE KINASE 14 333 - -
Trre12g00412 509 ProSiteProfiles Protein kinase domain profile. 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00412 509 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 289 329 IPR015940 -
Trre12g00412 509 FunFam Non-specific serine/threonine protein kinase 392 507 - -
Trre12g00412 509 CDD UBA_SnRK1_plant 290 330 - -
Trre12g00412 509 SUPERFAMILY Protein kinase-like (PK-like) 13 285 IPR011009 -
Trre12g00412 509 FunFam Non-specific serine/threonine protein kinase 7 346 - -
Trre12g00412 509 CDD STKc_AMPK_alpha 15 268 - -
Trre12g00412 509 CDD AMPKA_C 386 506 - -
Trre12g00412 509 Gene3D Kinase associated domain 1, KA1 392 507 - -
Trre12g00412 509 Pfam Kinase associated domain 1 467 508 IPR001772 -
Trre12g00412 509 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 461 508 IPR001772 -
Trre12g00412 509 Pfam Protein kinase domain 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00412 509 SUPERFAMILY KA1-like 325 508 IPR028375 -
Trre12g00412 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Trre12g00412 509 FunFam Aurora kinase A 8 99 - -
Trre12g00412 509 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Trre12g00412 509 SMART serkin_6 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00412 Trre-Chr12 3493083 3498196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00412 16 268 CBL-interacting serine-threonine protein kinases AT4G24400 51.575 2.56e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Trre12g00412 Pkinase 2.3e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00412 K07198 - gmx:547544 910.212