Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00411 ATGGGTTTGGAGAGCTCGTGGTTTGGTGGTGGTGGATCTTGGTTTTGTTTGCTGATTTCGTCTCCAGATTTGATGAGATCTGCAGCTTTCAGGATCGTTGCTTCGCCGCTGCCGTCGTGCCGGTGGTCTTGGGTTTCTCTACTTCGGGTCGGTGGTGGTTCTGCTGGGCCCGTTGTTTTCTTTACTTTTGTTGCTGCATATGGTTTTCTTACTCCTTTTCCACTACAGATTTTAAGAATGGATGGATCAACTAGCCCTGGCTGTGGAAGTGTGAACAAGTGTATTGCAAATTATAAGTTGGTTAGGACACTGTGCTCTTGGAAATTTGGCAAGATAATTTCTGGTGTGGAGTATTGTCACAACAATATGGTGGCTCATAGAGACTTAAGGCCTGAAAATATATTTTTGGACTCAAAATATAATATCAAGATTGCTGATTTTAGCTTGAGCAAAACTATGAAACATGGTCAATTACTTAAGACAAGTTGTGGAAGTACTCACTATGCAGCCCCTGAGGTTTCTGTTGAAGATGATGAAATGTATGTTTCTGATACTGATGACTATACTTTGCATGAATATGATAATAATCGTGATTTCGGCTGGGAGCATATTATCCGTGACACCAAGAGTCAAGTTGAACATATCCCTCCTAAGACTGCTAGAGGTGTTATACGAAACAGGAAAAAAATCAAAATTCGAACCAGACACAATGGAGATGGCACGAAGTGCACAATCAAGACTTACAAAAGGGACCGAAATGGACCAACTGAGATGTACTTAACTGAAGGATGA 792 0.4141 MGLESSWFGGGGSWFCLLISSPDLMRSAAFRIVASPLPSCRWSWVSLLRVGGGSAGPVVFFTFVAAYGFLTPFPLQILRMDGSTSPGCGSVNKCIANYKLVRTLCSWKFGKIISGVEYCHNNMVAHRDLRPENIFLDSKYNIKIADFSLSKTMKHGQLLKTSCGSTHYAAPEVSVEDDEMYVSDTDDYTLHEYDNNRDFGWEHIIRDTKSQVEHIPPKTARGVIRNRKKIKIRTRHNGDGTKCTIKTYKRDRNGPTEMYLTEG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00411 263 PANTHER SERINE/THREONINE KINASE 108 181 - -
Trre12g00411 263 Gene3D Transferase(Phosphotransferase) domain 1 88 190 - -
Trre12g00411 263 Pfam Protein kinase domain 109 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00411 263 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00411 263 SMART serkin_6 44 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00411 263 SUPERFAMILY Protein kinase-like (PK-like) 109 174 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00411 Trre-Chr12 3487836 3491994 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00411 92 173 CBL-interacting serine-threonine protein kinases AT4G24400 46.988 1.30e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Trre12g00411 Pkinase 1.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00411 K07198 - psom:113332510 108.227