Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00409 ATGGATGGATCAAGTAGCTCTGGCTATGGAAGTGTGAACAAGTGTATTGCAAATTATAAGTTGGTTAGGACACTGTGCTTTTGGAAATTTGGCAAGATAATTTCTGGTGTGGAGTATTGTCACAACAATATGGTGGCTCATAGAGACTTAAGGCCTGAAAATATATTTTTGGACTCAAATTATAATATCAAGATTGCTGGTTTTAGCTTGGGCAAAACTATGAAACATGGTCAATTACTTAAGACAAGTTGTGGAAGTACTCACTATGCAGCCCCAGAGGTTATCTCTGGAAAATTATATGCTGGATCTAAAGTTGATGTTTGGAGTTGTGGTGTACTTTTATATGCTCTTCTATGTGGTAGACTTCCTTTTGATGATGAAAATATTCCCAAGCTTTACATAAATATAAAGGGAGGCGTATACACTATTCCTAGTTATTTATCAAATGGTGCTAGTGACTTAATATCAAGGCTTCTTGAGGTGGATCCTATGAAGAGAATTACCATACTAGAGATACACCAACACCCTTGGTTCAAAATTTCTCTCCCACATTATTTGGCATTGCCACCACCACCACCACCAGAGAAAGTTCAACAACCCAAAAAGGAGGAGTTATGGCTTGACAATCCAGGATACTAA 639 0.3772 MDGSSSSGYGSVNKCIANYKLVRTLCFWKFGKIISGVEYCHNNMVAHRDLRPENIFLDSNYNIKIAGFSLGKTMKHGQLLKTSCGSTHYAAPEVISGKLYAGSKVDVWSCGVLLYALLCGRLPFDDENIPKLYINIKGGVYTIPSYLSNGASDLISRLLEVDPMKRITILEIHQHPWFKISLPHYLALPPPPPPEKVQQPKKEELWLDNPGY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00409 212 MobiDBLite consensus disorder prediction 191 212 - -
Trre12g00409 212 PANTHER SERINE/THREONINE KINASE 30 192 - -
Trre12g00409 212 Gene3D Transferase(Phosphotransferase) domain 1 9 204 - -
Trre12g00409 212 FunFam Maternal embryonic leucine zipper kinase 7 186 - -
Trre12g00409 212 Pfam Protein kinase domain 31 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00409 212 SMART serkin_6 8 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00409 212 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00409 212 SUPERFAMILY Protein kinase-like (PK-like) 27 198 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00409 Trre-Chr12 3475937 3479687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00409 13 178 CBL-interacting serine-threonine protein kinases AT4G24400 46.108 4.60e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Trre12g00409 Pkinase 5.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00409 K07198 - gmx:547544 247.284