Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00408 ATGGCAAGAAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTTTGGGATGAAATGATGAAAGAAGCTGCATCACTTGGAGGAGGAAGACGAGTCCGAAAGAGATTTGTCGGTGTTCGACAAAGGCCATCGGGTAGATGGGTTGCTGAGATTAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAGGCTGCTTGTTTGCTTCGAGGCGCAAATACTCGGACGAATTTTTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACTAATCTTCTACTTCAAAGACTTAAAGAAAGGAATATGAATATGAATAATAATTCTTGTTCATCCTTTTCTTCGTCGAAATTTACTTCCTTGTTGGGGAGTTCAGGGGAGCGTCGAGAGCAACAACGAGTCAATGATCAGGATCATCAGGAGATCCAACAAGTAGAACCCTATGGAGAAGGATCAAAAGATTTTTCAATTGATCAATTCACTGATTTCCTTAATGATCATGTAGATTATACAACAATCAACAATGAAATCATCAATGACACTGCACAATTCGATTACATTTCGAGTAGTTTCGAATCATGTTTAACCGAAAACAATGGTTGTAACAACAAAGAGGATGAAATGAATATGGAATCTAAATCAAACAATGTAACACAAACTTCAAGTGGTGATAGTAATTCAGAAGATAGTGAAGAAGAAGTCAATAATGATGTTCCTGATTTTCGGTTCCTCGACGATATTGCTCCAACTAGTTACTATTCTCCTTTTGAAATTGCTGAAGAAATGGAAGAACAAATGGAAACAGAAAGTTTTTGTGATGAGCCTTCAATGATTAGAGCTGTTATGAAAAGAATGAAATATGAAAGAAAATTTTCAGCTTCTCTTTATGCATTTAATGGAATACCAGAATGCTTGAAATTAAAACTTGAATCATCAGGAAACAATAATGGAAGAGGAATTTCTGATCAATTGAACAATCTCAAGGAAGCATGTAGCAAGAATAAACTTGAGAAGAAGAAAAATGAAGAAAATCAACAAAGTTCAATTGAGATAGAGTCTTCATCTTTGTCTAGGAATGATAGTGATATTTTCCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTCAATTAG 1218 0.3539 MARKRKVSEVVEEGSMVWDEMMKEAASLGGGRRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNMNNNSCSSFSSSKFTSLLGSSGERREQQRVNDQDHQEIQQVEPYGEGSKDFSIDQFTDFLNDHVDYTTINNEIINDTAQFDYISSSFESCLTENNGCNNKEDEMNMESKSNNVTQTSSGDSNSEDSEEEVNNDVPDFRFLDDIAPTSYYSPFEIAEEMEEQMETESFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESSGNNNGRGISDQLNNLKEACSKNKLEKKKNEENQQSSIEIESSSLSRNDSDIFLWNSLDLPPICFVNLLENGSFN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00408 405 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Trre12g00408 405 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Trre12g00408 405 Coils Coil 343 363 - -
Trre12g00408 405 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Trre12g00408 405 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Trre12g00408 405 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Trre12g00408 405 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Trre12g00408 405 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Trre12g00408 405 MobiDBLite consensus disorder prediction 221 258 - -
Trre12g00408 405 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Trre12g00408 405 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 311 - -
Trre12g00408 405 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00408 Trre-Chr12 3461727 3462944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00408 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.06e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g00408 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00408 K09286 - gmx:100790398 465.307