Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00393 ATGTTGCACACCATGAAAATATTATTATTTATTTGGTTCTTAATATTTTCCTATACTACAAGAACTTCTACTTCACTAAACACTTTAGCAGTTGGTGAATCTATCAAAGATGGTGAGACTTTAGTTTCATCAAGTGGAATTATTGAAATGGGTTTCTTTAGCCCTCAAAATTCAACACAAAGATTAAGATACTTAGGTATATGGTATAGGAATGTGTCCCCTTTAACTGTTGCTTGGGTAGCAAACAATGAAAAACCTCTACAAGATAAATCAGGAGTTTTGAGACTCAATGAAAAGGGGATTCTTTTGCTTCTCAATGATGTAAATAGTACTATTTGGTCATCTAAGATATCAAACATAAAAGATAATAGTACTCCAATTGCTCAGCTCTTGGATAGTGGAAATTTTGTAGTGAAAAATAGAAGGGAAACTAAGAAAGACAGGTTTCTGTGGCAGAGTTTTGATTATCCCGGTGATACGTTGATGCCAGGAATGAAGCTTGGATGGGACTTAGAAACTGGTCTAGAAAGATATATATCATCTTGGAAAAGTGTTGATGATCCTTCTAAGGGAGAAATCACTACAAGAGTTGATCTAAGAGGATATCCACAAGTAATTATGTTCAATGGATCTTCTCATATAATATTTAGATCAGGGCCATGGAATGGTCAATCTTTGACTGGATCACCAGGTTCAAATTCTGCATTGTCACAAATTTTTGTCTTCAATGAAAAAGAAGTGTACTATGAGTACCAAATTCTTGACAGTTCAATTTTCAGTGTACTTAAATTGATGCCTTATGGACCTGCACAGAAATATTTTTGGACAAGTCAATCAAGCATAAGGCAAGTATTACCAACAAATTCAGATGAATGTCAAATATATGCATTTTGTGGTGCAAATTCTGTATGTACTATTGATGGTAAGAACCATCCAAATTGTGAATGCATGAAAGGATATGTTCCAAAATTTCCTGAAGAGTGGAATCTAGCATTTTGGTCGAACGGTTGTGTTCGAACGAAGAAACCTAGTTATACAGACGGTTTCTTGAAGTACACACTCGTGAAAGTGCCGGACACATCTTCGTCATGGTTTAGTAAGGAGTTGAATCTTGAGGAATGCCGGAATTCGTGTCTGAGAAATGGTTCGTGTGTAGCGTATGCAAATATCGATATCCGTAACGGAGGAAGTGGATGTCTTATATGGTTTAATAATCTTATGGATGTGAGGAAATTCTCTAAATGGGGACAAGATCTTTATGTCAGGGTCTCTCCTTCAGAATTAGATCATGCAGCAATTGGACACAAAAATAACAAGAATAAGATAATAGGAATCACATTTGCTGTGATTATCTTTGGATTAATTACATTTTTATCCATATTATTGACTATTAAAAATCCAGGAGTTGCAAAAAAGTTTTGCTGCACAATTTGGAATACTAAACCAAGAAAGGAAAACCTTGATTTAACAACATTCGATTTGTCCGTCTTGGTTAAAGCCACTGACAACTTTTCGAGCAGTAACAGACTCGGAGAAGGTGGTTTTGGACCCGTATACAAGGGTACAATGGTAGATGGGCAAGAGATAGCAGTGAAAAGGCTTTCGAAGAAATCGGGACAAGGGTTGCAGGAATTCAAAAATGAAGTAGCATTGATCGCCAAACTTCAACACCGTAATCTTGTCAAGCTTCTCGGATGCTGCATTCAAGGAGGAGAAACAATGTTGATCTATGAATACATGCCGAACAAAAGTTTGGACTACTTTGTTTTTGATGAAATCAAAAGGATGTCACTAGATTGGACTAAGCGTTTCAACATTATCAGCGGCGTTGCTTGGGGACTTCTTTATCTTCATCGTGACTCTAGGTTGAGGATAGTCCATAGAGATCTAAAAGCTAGCAATATATTACTAGATGCAAATTTCGATCCAAAAATATCAGACTTTGGTTTGGCTCGAACATTTTTTGGAGATCAAGTTGAGGCAAACACAAATAGGGTGGCTGGAACATACGGTTACATGCCTCCAGAGTACGCTGGTCGTGGACATTTCTCTACGAAATCGGATGTCTTTAGTTATGGTGTGATAGTACTCGAGATAGTGTCCGGGAAGAAGAACACAAAATTTTCTGACCCAGAATATTACCACAATCTTCTTGGATATGCATGGAGATTATGGTCAGAAGAAAGGGCATTGGATCTATTGGATGAAAGTTTAGGGAAACAATGTACACCTTCTGAAGTCATTCGATGCGTACAAGTGGGGTTATTATGCGTTCAACAAAGACCGGAAGATAGGCCAGACATTTCATCTGTGGTTTTAATGCTGAATGGCGAAAAATTATTGCCAAAGCCAAAGTTTCCTGGCTTTTACATTGAAAACAATGTAAAACCTGAATTAGATTCTTCATCTTCGAATCAAAACCTATTTTCGGCTAATGAATTATCCATCACAGAGTTAGTTGCAAGATAG 2469 0.3702 MLHTMKILLFIWFLIFSYTTRTSTSLNTLAVGESIKDGETLVSSSGIIEMGFFSPQNSTQRLRYLGIWYRNVSPLTVAWVANNEKPLQDKSGVLRLNEKGILLLLNDVNSTIWSSKISNIKDNSTPIAQLLDSGNFVVKNRRETKKDRFLWQSFDYPGDTLMPGMKLGWDLETGLERYISSWKSVDDPSKGEITTRVDLRGYPQVIMFNGSSHIIFRSGPWNGQSLTGSPGSNSALSQIFVFNEKEVYYEYQILDSSIFSVLKLMPYGPAQKYFWTSQSSIRQVLPTNSDECQIYAFCGANSVCTIDGKNHPNCECMKGYVPKFPEEWNLAFWSNGCVRTKKPSYTDGFLKYTLVKVPDTSSSWFSKELNLEECRNSCLRNGSCVAYANIDIRNGGSGCLIWFNNLMDVRKFSKWGQDLYVRVSPSELDHAAIGHKNNKNKIIGITFAVIIFGLITFLSILLTIKNPGVAKKFCCTIWNTKPRKENLDLTTFDLSVLVKATDNFSSSNRLGEGGFGPVYKGTMVDGQEIAVKRLSKKSGQGLQEFKNEVALIAKLQHRNLVKLLGCCIQGGETMLIYEYMPNKSLDYFVFDEIKRMSLDWTKRFNIISGVAWGLLYLHRDSRLRIVHRDLKASNILLDANFDPKISDFGLARTFFGDQVEANTNRVAGTYGYMPPEYAGRGHFSTKSDVFSYGVIVLEIVSGKKNTKFSDPEYYHNLLGYAWRLWSEERALDLLDESLGKQCTPSEVIRCVQVGLLCVQQRPEDRPDISSVVLMLNGEKLLPKPKFPGFYIENNVKPELDSSSSNQNLFSANELSITELVAR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00393 822 Pfam D-mannose binding lectin 76 183 IPR001480 -
Trre12g00393 822 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Trre12g00393 822 Gene3D Phosphorylase Kinase; domain 1 479 579 - -
Trre12g00393 822 Pfam PAN-like domain 345 409 IPR003609 -
Trre12g00393 822 Gene3D - 21 154 IPR036426 -
Trre12g00393 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 423 - -
Trre12g00393 822 CDD B_lectin 33 157 IPR001480 -
Trre12g00393 822 SMART serkin_6 504 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00393 822 FunFam - 580 784 - -
Trre12g00393 822 Pfam Protein tyrosine and serine/threonine kinase 507 773 IPR001245 GO:0004672|GO:0006468
Trre12g00393 822 CDD PAN_AP_plant 341 424 - -
Trre12g00393 822 Pfam S-locus glycoprotein domain 216 324 IPR000858 GO:0048544
Trre12g00393 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Trre12g00393 822 SMART blect_4 32 157 IPR001480 -
Trre12g00393 822 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00393 822 CDD STKc_IRAK 510 777 - -
Trre12g00393 822 Gene3D Transferase(Phosphotransferase) domain 1 580 781 - -
Trre12g00393 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 579 - -
Trre12g00393 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Trre12g00393 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 188 IPR036426 -
Trre12g00393 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 154 - -
Trre12g00393 822 ProSiteProfiles PAN/Apple domain profile. 337 424 IPR003609 -
Trre12g00393 822 SMART ntp_6 344 423 IPR003609 -
Trre12g00393 822 ProSiteProfiles EGF-like domain profile. 288 326 IPR000742 -
Trre12g00393 822 SUPERFAMILY Protein kinase-like (PK-like) 489 775 IPR011009 -
Trre12g00393 822 Gene3D Hepatocyte Growth Factor 342 420 - -
Trre12g00393 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00393 Trre-Chr12 3364750 3368805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00393 449 793 Receptor kinase-like Gene Family AT4G23230 54.000 4.00e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g00393 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00393 - - tpra:123905706 1258.05