Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00392 ATGGCACCTTTTGTATTGACAGTGTCACAAAATGGAACAGGAAACTACAGAACAGTACAAGAAGCCATTGATGCAGTGCCACTCGGCAATACTCGTCGGACGGTTATAAGGATATCACCAGGAATCTACCGGCAACCACTATATGTTGCAAAGACTAAGAACTTCATCACTTTTGTTGGTTTGTCTCCTGAAGATACTGTTCTAACATGGAACAATACTGCCAATAAAATTGATCACCACCAAGGTTCTAAGGTGATAGGGAATGGAACTTTTGGTTGTGGAAGTACCATTGTGGAAGGGGAAGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTTCTCCTGAGGGTTCTGGGCAAGCAGTGGCAGTTAGAGTATCAGCAGATCGATGTGCATTCTATAATTGTAGGTTCCTTGGGTGGCAGGATACACTGTACTTACATTCTGGAAAACAATATTTGAAAGATTGTTATATTGAAGGAAGTGTAGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCATTGCCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGTAGAAAATCTCCACATGAAAAAACTGGTTATGTTTTCCTAAGATGTGTTATAACAGGCAAGGGAGAAAGTGCATATGCATATCTTGGAAGGCCATGGGGACCTTTTGGAAGAGTAGTCTTTGCATTTACTTATATGGATCATTGTATAAAATCTGCTGGTTGGAATAATTGGGGAAAAGTTGAGAATGAAAGAAGTGCTTGCTTCTACGAATACAGGTGTTTTGGACCGGGTTTTGTTCCATCAAAACGCGTGAAATGGGCAAGAGTGTTGAAGGATAAAGAAGCTGAGCAATTTCTCATGCATAGCTTCATTGATCCAGAACCACAAAGACCTTGGCTTGCTCAAAGAATGGCCTTAAGGATTCCATATTCTGCTTAG 951 0.4059 MAPFVLTVSQNGTGNYRTVQEAIDAVPLGNTRRTVIRISPGIYRQPLYVAKTKNFITFVGLSPEDTVLTWNNTANKIDHHQGSKVIGNGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAVRVSADRCAFYNCRFLGWQDTLYLHSGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPHEKTGYVFLRCVITGKGESAYAYLGRPWGPFGRVVFAFTYMDHCIKSAGWNNWGKVENERSACFYEYRCFGPGFVPSKRVKWARVLKDKEAEQFLMHSFIDPEPQRPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00392 316 Gene3D - 4 309 IPR012334 -
Trre12g00392 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Trre12g00392 316 FunFam Pectinesterase 2 309 - -
Trre12g00392 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Trre12g00392 316 SUPERFAMILY Pectin lyase-like 3 303 IPR011050 -
Trre12g00392 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00392 Trre-Chr12 3361907 3363953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00392 5 309 Carbohydrate Esterase AT5G47500 38.801 2.08e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00392 K01051 - gmx:100810259 572.392