Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00382 ATGGGAAGATCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGCGCTTTACCCGCTAAAGCCGGACTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCTGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACAATTATTCAACTCCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGTCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGATTAACAAAAATGGGAATTGATCCTGTTACACACAAGCCTAAAAATGATACTCTTCTTTCATCAAGTGATAATGCTCATTCAAAAACAGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATTCGTTCACATAATCATAATCATAATCACTTTGGTGGAAATTCTCATTTGAAGGCTTGGAATATTAATCTTGAATCTCCTACTTCAACTTTATCTTACAATGAAAATGTGACACCAATTATTACTAGTGGAGAAATTGGGGGTGAAAATAGCAAAAAAAACAACAATGATGATGAAAATATTAATAATGATGAAAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGGACAAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGAACAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAGAAGGTGTTGGTGATGTTATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAAACAAATTCTGAAGATTTGAGTTTGTCAGAAAGTGGAGGTGAATCTAACAATGGTGGTGGTGATGATGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCTTCTGATTCACCAATGTTTTGA 1080 0.3454 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDTLLSSSDNAHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNHNHNHFGGNSHLKAWNINLESPTSTLSYNENVTPIITSGEIGGENSKKNNNDDENINNDENNVVVSMIEFVGTNSSSIVKEEGGDDQEQWKGYESSLTFTSNLHHELTMSMDQEGVGDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGGDDGSGSEFYEDNNNYWNSILNLVNSSPSDSPMF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00382 359 Gene3D - 13 66 - -
Trre12g00382 359 CDD SANT 69 112 IPR001005 -
Trre12g00382 359 SMART sant 66 114 IPR001005 -
Trre12g00382 359 SMART sant 13 63 IPR001005 -
Trre12g00382 359 MobiDBLite consensus disorder prediction 214 233 - -
Trre12g00382 359 CDD SANT 16 61 IPR001005 -
Trre12g00382 359 FunFam MYB-related transcription factor 13 66 - -
Trre12g00382 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre12g00382 359 Gene3D - 68 148 - -
Trre12g00382 359 MobiDBLite consensus disorder prediction 311 334 - -
Trre12g00382 359 MobiDBLite consensus disorder prediction 122 142 - -
Trre12g00382 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre12g00382 359 FunFam MYB transcription factor 69 116 - -
Trre12g00382 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 243 - -
Trre12g00382 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre12g00382 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre12g00382 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre12g00382 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre12g00382 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00382 Trre-Chr12 3272737 3275090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00382 1 359 MYB Transcription Factor Family AT3G01140 55.381 3.38e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g00382 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00382 K09422 - gmx:100101835 444.121