Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00381 ATGGATGCAATGGAGAAAAATTCAAGAGATGTAGAGAGTGATAAAAATTTTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAGTTCTTGATAATTGCTTTTGTGCTATTGCCATTGGAGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCTTGGAGGGCCAAAATGGGTGAGAAGGAATGGTATTTTTTCTGTGTGAGGGATAGGAAATATCCAACTGGACTAAGGACAAATAGGGCCACAAGTGCTGGGTATTGGAAGGCAACAGGTAAAGACAAAGAAATATATAGAGAGAAGATACTAATTGGAATGAAGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAGAGGTGAAAAAACAAATTGGGTCATGCATGAATACAGATTAGAAGACACATATTCTTTGCATAACATATCCAAAAGAGCTATGAAGGAGTGGTCTATATGCAGAGTTTTTGAGAAAGGTTCTTGTGGAAAGAAAATGCATATTCAAGATTTGGCAAGTTTCAATTCAATTGGAAAAGAACAACTACCTCCATTGATGCATTCACCACCAAACAATAGTGAAACAAAAAATACTATTGGAGATTCATCACATGTGACATGTTACAATGATCCAAATCTAATTGATTATAATCAAAGGACACAAAAAGATAATGACAACAACATAGTTGATGAAACTCCAATGTTAGCATCTTCATATTCTTCAAACCCTTCTTATGATAATAATAATATTTCCCCTGCCTCATGGACCCCTACTATGTCACACCAATCAAAACAAATTGGAAATTCAAATTCTTCAGATTGTTTTATGGTTCAAGAACAATCCATGTTGAAGATGTTGATTGATGAAAATAATGGAACAAGTACAAAAACAAAAAATCAGAAAGCTCAAGAATGTGACTTTGATGTTGACATTTCATCTATGATGTACAACAATGAAATGTTTCAAAGACCATATGTTAGTGAAGAATATTCATCATCTTCAATAGGACATTATGAAAGTGGTTATCTATGGAATTTTTGA 1071 0.3408 MDAMEKNSRDVESDKNFELPPGFRFHPTDEELITHYLSQKVLDNCFCAIAIGEADLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATSAGYWKATGKDKEIYREKILIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEDTYSLHNISKRAMKEWSICRVFEKGSCGKKMHIQDLASFNSIGKEQLPPLMHSPPNNSETKNTIGDSSHVTCYNDPNLIDYNQRTQKDNDNNIVDETPMLASSYSSNPSYDNNNISPASWTPTMSHQSKQIGNSNSSDCFMVQEQSMLKMLIDENNGTSTKTKNQKAQECDFDVDISSMMYNNEMFQRPYVSEEYSSSSIGHYESGYLWNF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00381 356 FunFam NAC domain-containing protein 100-like 28 173 - -
Trre12g00381 356 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Trre12g00381 356 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Trre12g00381 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 274 - -
Trre12g00381 356 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Trre12g00381 356 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00381 Trre-Chr12 3250253 3252013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00381 18 356 NAC Transcription Factor Family AT5G07680 49.118 1.04e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g00381 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00381 - - gmx:100781383 455.677