Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00380 ATGATGGATGCAATGGAGAAAAATTCAAGAGATGTAGAGAGTGATAAAAATTTTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAGTTCTTGATAATTGCTTTTGTGCTATTGCCATTGGAGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCTTGGAGGGCCAAAATGGGTGAGAAGGAATGGTATTTTTTCTGTGTGAGGGATAGGAAATATCCAACTGGACTAAGGACAAATAGGGCCACAAGTGCTGGGTATTGGAAGGCAACAGGTAAAGACAAAGAAATATATAGAGAGAAGATACTAATTGGAATGAAGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAGAGGTGAAAAAACAAATTGGGTCATGCATGAATACAGATTAGAAGACACATATTCTTTGCATAACATATCCAAAAGAGCTATGAAGGAGTGGTCTATATGCAGAGTTTTTGAGAAAGGTTCTTGTGGAAAGAAAATGCATATTCAAGATTTGGCAAGTTTCAATTCAATTGGAAAAGAACAACTACCTCCATTGATGCATTCACCACCAAACAATAGTGAAACAAAAAATACTATTGGAGATTCATCACATGTGACATGTTACAATGATCCAAATCTAATTGATTATAATCAAAGGACACAAAAAGATAATGACAACAACATAGTTGATGAAACTCCAATGTTAGCATCTTCATATTCTTCAAACCCTTCTTATGATAATAATAATATTTCCCCTGCCTCATGGACCCCTACTATGTCACACCAATCAAAACAAATTGGAAATTCAAATTCTTCAGATTGTTTTATGGTTCAAGAACAATCCATGTTGAAGATGTTGATTGATGAAAATAATGGAACAAGTACAAAAACAAAAAATCAGAAAGCTCAAGAATGTGACTTTGATGTTGACATTTCATCTATGATGTACAACAATGAAATGTTTCAAAGACCATATGTTAGTGAAGAATATTCATCATCTTCAATAGGACATTATGAAAGTGGTTATCTATGGAATTTTTGA 1074 0.3408 MMDAMEKNSRDVESDKNFELPPGFRFHPTDEELITHYLSQKVLDNCFCAIAIGEADLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATSAGYWKATGKDKEIYREKILIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEDTYSLHNISKRAMKEWSICRVFEKGSCGKKMHIQDLASFNSIGKEQLPPLMHSPPNNSETKNTIGDSSHVTCYNDPNLIDYNQRTQKDNDNNIVDETPMLASSYSSNPSYDNNNISPASWTPTMSHQSKQIGNSNSSDCFMVQEQSMLKMLIDENNGTSTKTKNQKAQECDFDVDISSMMYNNEMFQRPYVSEEYSSSSIGHYESGYLWNF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00380 357 FunFam NAC domain-containing protein 100-like 29 174 - -
Trre12g00380 357 Gene3D NAC domain 29 173 IPR036093 GO:0003677|GO:0006355
Trre12g00380 357 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Trre12g00380 357 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Trre12g00380 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 275 - -
Trre12g00380 357 SUPERFAMILY NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00380 Trre-Chr12 3250250 3252013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00380 19 357 NAC Transcription Factor Family AT5G07680 49.118 9.65e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g00380 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00380 - - gmx:100781383 455.677