Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00374 ATGGGTGGGGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTTCATGCTATGAAATAAAATGTGCAAATGACCCAAAATGGTGTCTCCCTGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCACAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCATATTTCAACTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCAATCAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGACAAAATTGGCAGAGCAACTCTTACTTAAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGACAGTTCCTCTACTAA 603 0.4146 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCANDPKWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00374 200 Pfam Lytic transglycolase 19 96 IPR009009 -
Trre12g00374 200 PRINTS Expansin signature 41 52 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 53 63 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 117 138 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 81 94 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 152 173 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 64 81 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 105 117 IPR002963 GO:0009664
Trre12g00374 200 PRINTS Expansin signature 181 197 IPR002963 GO:0009664
Trre12g00374 200 Gene3D - 1 102 IPR036908 -
Trre12g00374 200 Gene3D - 106 198 IPR036749 -
Trre12g00374 200 CDD DPBB_EXPA_N 1 91 - -
Trre12g00374 200 FunFam Expansin 106 198 - -
Trre12g00374 200 SUPERFAMILY Barwin-like endoglucanases 1 124 IPR036908 -
Trre12g00374 200 SMART dpbb_1 19 96 IPR007112 -
Trre12g00374 200 Pfam Expansin C-terminal domain 107 184 IPR007117 -
Trre12g00374 200 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Trre12g00374 200 PRINTS Expansin/Lol pI family signature 89 105 IPR007118 GO:0005576
Trre12g00374 200 PRINTS Expansin/Lol pI family signature 143 157 IPR007118 GO:0005576
Trre12g00374 200 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Trre12g00374 200 PRINTS Expansin/Lol pI family signature 181 195 IPR007118 GO:0005576
Trre12g00374 200 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 116 195 IPR007117 -
Trre12g00374 200 PANTHER EXPANSIN-A15 1 198 IPR002963 GO:0009664
Trre12g00374 200 SUPERFAMILY PHL pollen allergen 103 195 IPR036749 -
Trre12g00374 200 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 106 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00374 Trre-Chr12 3190940 3192838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00374 1 200 Expansin Gene Family AT3G29030 82.090 2.71e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00374 K20628 - gmx:100790170 389.423