Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00373 ATGTCTCATCTATGCTTTCTTGTTCTTGGAATTATGTTCTCCATGATCTCATATGTTTATGGTTATGGAAACAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGTAGTGATGCTTCTGGCACAATGGGTGGGGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTTCATGCTATGAAATAAAATGTGCAAATGACCCAAAATGGTGTCTCCCTGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCACAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCATATTTCAACTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCAATCAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGACAAAATTGGCAGAGCAACTCTTACTTAAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGACAGTTCCTCTACTAA 735 0.4095 MSHLCFLVLGIMFSMISYVYGYGNNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCANDPKWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00373 244 PANTHER EXPANSIN-A15 18 242 IPR002963 GO:0009664
Trre12g00373 244 CDD DPBB_EXPA_N 27 135 - -
Trre12g00373 244 SMART dpbb_1 63 140 IPR007112 -
Trre12g00373 244 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Trre12g00373 244 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre12g00373 244 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Trre12g00373 244 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Trre12g00373 244 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Trre12g00373 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Trre12g00373 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Trre12g00373 244 SUPERFAMILY PHL pollen allergen 147 239 IPR036749 -
Trre12g00373 244 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Trre12g00373 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Trre12g00373 244 Gene3D - 19 146 IPR036908 -
Trre12g00373 244 FunFam Expansin 150 242 - -
Trre12g00373 244 Gene3D - 150 242 IPR036749 -
Trre12g00373 244 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Trre12g00373 244 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Trre12g00373 244 SUPERFAMILY Barwin-like endoglucanases 27 168 IPR036908 -
Trre12g00373 244 FunFam Expansin 17 146 - -
Trre12g00373 244 Pfam Lytic transglycolase 63 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00373 Trre-Chr12 3190940 3192970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00373 8 242 Expansin Gene Family AT2G03090 77.328 1.62e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00373 - K20628 gmx:100799370 441.039