Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00365 ATGATGGAGGTTTTAACAACAACTACTACCACCACAAACACAAACACAATCACTACTCCATTAACAAATTCTAAACCACAAGAACCCGACTCAGAAAACCCGACCCGAATTCAACAACCCACAACCTTAAACATAACAAAGCCTTTGTCTTTTTCAAATGGGGTTCTTAAACGCCACCACCCAAACAATCACAACCACCACAACAACCACCATAACAATAACAACAACGTTGTTGTTTCTTACAAAGAATGTCTCAAAAACCACGTGGCAACTTTAGGTGGTCATGCACTCGATGGTTGTTGTGAATTCATGCCGTCACCAACCGCCACCTCCGACGACCCTGTTTCCATAAAATGCGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCCACCGTTTTTGAATACCAACCACATCATCGCCACCACCCACCTCCGCCGCCGCTTTTTCAGTCCCGTTCACCAAGCTCCCCGTCACCACCGCCGATCTCATCATACCCATCAGCTCCTCATATGCTTTTAGCACTCTCCGGCGCCGGAGTTGGACTCTCAATCCCGCCGGAAAACACAGCAGTACCGTTAAACCTTAGTTCTCCTATGGGTACTAGTAGAAAAAGATTCAGAACGAAATTCACGCAAGAACAAAAGGAAAAGATGCATGAATTTGCTGAAAAAGTTGGGTGGAAGATGCAGAAAAGAGATGAAGAAATGGTGAATGGGTTTTGCAATGAAGTTGGTGTTGATAGAGGTGTTCTTAAAGTTTGGATGCATAATAATAAGAACACTTTGGGGAGAAAATTAACAGATCATGTCAATGGTAACGGCGCCGCCGTGGGAGCCGCCGTTGACGGTGGCTCCGGTGGTGGTTTTAGTGTTCATGAGAATGATAATAATGGGACTAATGTTGCTGCTTGTGGTACTACTAATGGGTCTTCTTCTTCTTCTTGA 969 0.453 MMEVLTTTTTTTNTNTITTPLTNSKPQEPDSENPTRIQQPTTLNITKPLSFSNGVLKRHHPNNHNHHNNHHNNNNNVVVSYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPVSIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAVPLNLSSPMGTSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEEMVNGFCNEVGVDRGVLKVWMHNNKNTLGRKLTDHVNGNGAAVGAAVDGGSGGGFSVHENDNNGTNVAACGTTNGSSSSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00365 322 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 270 - -
Trre12g00365 322 NCBIfam homeobox domain, ZF-HD class 211 268 IPR006455 -
Trre12g00365 322 Gene3D - 202 271 - -
Trre12g00365 322 Pfam ZF-HD protein dimerisation region 79 133 IPR006456 -
Trre12g00365 322 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 132 IPR006456 -
Trre12g00365 322 MobiDBLite consensus disorder prediction 1 38 - -
Trre12g00365 322 FunFam Zinc-finger homeodomain protein 2 201 272 - -
Trre12g00365 322 MobiDBLite consensus disorder prediction 150 173 - -
Trre12g00365 322 SUPERFAMILY Homeodomain-like 204 272 IPR009057 -
Trre12g00365 322 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
Trre12g00365 322 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00365 Trre-Chr12 3118862 3119830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00365 2 267 ZF-HD Transcription Factor Family AT5G15210 50.000 7.92e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre12g00365 ZF-HD_dimer 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00365 - - lja:Lj5g3v2258260.1 325.865