Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00364 ATGGGTTTAAGCAACGGCTCCCAGGGCTCAGCATACCAAAAGAGTAACCCCTCCTCCTTGGTTTTGAAGGAAAAAAGAAGAAGGTATATAAAGAAAGAAGAATTAGCAACAAGAATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAGGATACACAAAGAAGTGTTGTAAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTTATGGCAAGTAGTGAAGAAGGTACAAATGGTGCTCTAACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAAAGTGTTTCTGAGTGTTCAAATGGTACTTGA 369 0.3957 MGLSNGSQGSAYQKSNPSSLVLKEKRRRYIKKEELATRMRKRQVVVRRSEDTQRSVVKYGECQKNHAANVGGYAVDGCREFMASSEEGTNGALTCAACGCHRNFHKRELVETESVSECSNGT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00364 122 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 111 - -
Trre12g00364 122 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Trre12g00364 122 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Trre12g00364 122 MobiDBLite consensus disorder prediction 1 19 - -
Trre12g00364 122 MobiDBLite consensus disorder prediction 1 24 - -
Trre12g00364 122 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00364 Trre-Chr12 3082182 3085142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00364 39 120 Zinc finger-homeobox gene family AT3G28917 63.158 2.93e-33 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre12g00364 ZF-HD_dimer 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00364 - - aprc:113868039 138.658