Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00358 ATGTTTCTTCTGGAAGCCCATGGTACGGTCCAGAGTCCAGACCGTGCCAAGTACTTGGGTCCATTCTCTGGTGAAGCACCATCCTACCTCACTGGTGAATTCCCCGGCGACTATGGTTGGGATACTGCTGGGCTCTCTGCCGACCCAGAGACATTTGCCAAAAACCGTGAACTTGAGGTTATCCACAGTAGATGGGCTATGTTGGGTGCCTTGGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAATGGTGTCAAATTCGGCGAGGCCGTATGGTTCAAGGCAGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCCTAGTCCACGCACAAAGTATCCTTGCTATCTGGGCTGTCCAAGTTATCTTAATGGGAGCTGTTGAGGGTTACCGCATTGCTGGTGGACCTCTAGGTGAAGTTGTTGACCCACTATACCCTGGAGGTAGCTTCGACCCATTGGGCCTCGCTGAAGATCCAGAGGCTTTTGCAGAGTTAAAGGTGAAAGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTCGGTTTCTTCGTTCAGGCTATTGTAACCGGAAAAGGACCTATAGAGAATCTTGCTGACCACCTTGCTGACCCAGTTAACAACAATGCTTGGGCCTATGCTACAAACTTTGCCCCTGGAAAGTGA 681 0.5051 MFLLEAHGTVQSPDRAKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00358 226 FunFam Chlorophyll a-b binding protein, chloroplastic 17 219 - -
Trre12g00358 226 SUPERFAMILY Chlorophyll a-b binding protein 11 223 - -
Trre12g00358 226 Gene3D Chlorophyll a/b binding protein domain 17 219 - -
Trre12g00358 226 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 11 226 IPR001344 GO:0009765|GO:0016020
Trre12g00358 226 Pfam Chlorophyll A-B binding protein 26 192 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00358 Trre-Chr12 3019595 3020275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00358 14 226 Chloroplast and Mitochondria Gene Families AT1G29910 93.925 1.15e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00358 K08912 - dcr:108205519 435.261