LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00357	ATGGCTGCTTCATCAATGGCTCTCTCTTCTTCTTCTTTGGTTGGGAAGGCAATCAAGCTTTCCCCGTCCACTTCGGACCTTGGGAGTCCAGACCGTGCCAAGTACTTGGGTCCATTCTCTGGTGAAGCACCATCCTACCTCACTGGTGAATTCCCCGGCGACTATGGTTGGGATACTGCTGGGCTCTCTGCCGACCCAGAGACATTTGCCAAAAACCGTGAACTTGAGGTTATCCACAGTAGATGGGCTATGTTGGGTGCCTTGGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAATGGTGTCAAATTCGGCGAGGCCGTATGGTTCAAGGCAGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCCTAGTCCACGCACAAAGTATCCTTGCTATCTGGGCTGTCCAAGTTATCTTAATGGGAGCTGTTGAGGGTTACCGCATTGCTGGTGGACCTCTAGGTGAAGTTGTTGACCCACTATACCCTGGAGGTAGCTTCGACCCATTGGGCCTCGCTGAAGATCCAGAGGCTTTTGCAGAGTTAAAGGTGAAAGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTCGGTTTCTTCGTTCAGGCTATTGTAACCGGAAAAGGACCTATAGAGAATCTTGCTGACCACCTTGCTGACCCAGTTAACAACAATGCTTGGGCCTATGCTACAAACTTTGCCCCTGGAAAGTGA	732	0.5055	MAASSMALSSSSLVGKAIKLSPSTSDLGSPDRAKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00357	243	SUPERFAMILY	Chlorophyll a-b binding protein	29	240	-	-
	Trre12g00357	243	Pfam	Chlorophyll A-B binding protein	43	209	IPR022796	-
	Trre12g00357	243	FunFam	Chlorophyll a-b binding protein, chloroplastic	34	236	-	-
	Trre12g00357	243	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	3	243	IPR001344	GO:0009765\|GO:0016020
	Trre12g00357	243	Gene3D	Chlorophyll a/b binding protein domain	34	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00357	Trre-Chr12	3019471	3020275	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00357	1	243	Chloroplast and Mitochondria Gene Families	AT1G29930	82.772	1.39e-156	433

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00357	K08912		-	gmx:547819	452.981