Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00356 ATGGCTGCTTCATCAATGGCTCTCTCTTCTTCTTCTTTGGTTGGGAAGGCAATCAAGCTTTCCCCGTCCACTTCGGACCTTGGGGTCGGAAGAATCACAATGAGGAAAACAGCCACCAAGAAGAATGTTTCTTCTGGAAGCCCATGGTACGGTCCAGAGTCCAGACCGTGCCAAGTACTTGGGTCCATTCTCTGTAGATGGGCTATGTTGGGTGCCTTGGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAATGGTGTCAAATTCGGCGAGGCCGTATGGTTCAAGGCAGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCCTAGTCCACGCACAAAGTATCCTTGCTATCTGGGCTGTCCAAGTTATCTTAATGGGAGCTGTTGAGGGTTACCGCATTGCTGGTGGACCTCTAGGTGAAGTTGTTGACCCACTATACCCTGGAGGTAGCTTCGACCCATTGGGCCTCGCTGAAGATCCAGAGGCTTTTGCAGAGTTAAAGGTGAAAGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTCGGTTTCTTCGTTCAGGCTATTGTAACCGGAAAAGGACCTATAGAGAATCTTGCTGACCACCTTGCTGACCCAGTTAACAACAATGCTTGGGCCTATGCTACAAACTTTGCCCCTGGAAAGTGA 687 0.4978 MAASSMALSSSSLVGKAIKLSPSTSDLGVGRITMRKTATKKNVSSGSPWYGPESRPCQVLGSILCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00356 228 SUPERFAMILY Chlorophyll a-b binding protein 65 225 - -
Trre12g00356 228 Gene3D Chlorophyll a/b binding protein domain 62 221 - -
Trre12g00356 228 Pfam Chlorophyll A-B binding protein 65 194 IPR022796 -
Trre12g00356 228 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 63 228 IPR001344 GO:0009765|GO:0016020
Trre12g00356 228 FunFam Chlorophyll a-b binding protein 3A, chloroplastic 111 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00356 Trre-Chr12 3019471 3020275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00356 1 228 Chloroplast and Mitochondria Gene Families AT1G29930 71.536 3.84e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00356 K08912 - qsu:112030611 382.104