Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00350 ATGGCCACTTCAACAATGTCTCTCTCTTCTTCAACATTGGTTGGGAAAGCAATCAAACTTTCCCCGTCCACTCCGGACCTTGGAGTCGGAAGAATCACAATGAGGAAAACAACCATCAAGAAGAATGTTTCTTCTAGAAGCCCGTGGTACGGTCCAGACCGTGCCAAGTATTTGGGTCCATTCTCTGGTGAAGCTCCATCATATCTCACTGGTGAATTTCCCGGTGATTATGGTTGGGACACTGCTGGACTTTCTGCTGATCCAGAGACTTTTTCCAAAAATCGTGAACTCGAGGTCATCCATAGCAGATGGGCTATGTTGGGTGCCTTGGGATGTGTCTTCCCTGAGCTCTTGTCTCGCAATGGTGTCAAATTCGGTGAGGCTATTTGGTTCAAGGCAGGATCGCAAATCTTTAGTGAAGGTGGACTTGATTACTTGGGTAACCCAAGCCTAGTCCACGCACAAAGTATCCTTGCTATATGGGCTGTCCAAGTTATCTTAATGGGCGCTGTTGAGGGTTACCGCATTGCTGGTGGACCTCTTGGTGAAGTAGTCGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTAGGTCTTGCTGATGATCCAGAGGGTTTTGTAGAGTTGAAGGTAAAAGAGTTAAAGAATGGTAGATTAGCCATGTTCTCAATGTTTGGGTTCTTTGTTCAGGCTATTGTAACTGGAAAAGGACCTATTGAGAACCTTGCTGATCACCTTACCGACCCAGTTAACAACAACGCATGGGCTTATGCCACCAACTTTGTCCCGGGAAAGTGA 798 0.4699 MATSTMSLSSSTLVGKAIKLSPSTPDLGVGRITMRKTTIKKNVSSRSPWYGPDRAKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAIWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEGFVELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00350 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009765|GO:0016020
Trre12g00350 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Trre12g00350 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Trre12g00350 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Trre12g00350 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00350 Trre-Chr12 2989025 2989822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00350 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 85.019 1.42e-167 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00350 K08912 - gmx:100800351 493.426