Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00349 ATGGAAGAAAGAACTGAGATGGACAATAAGGTTGATGATTTGATGCCTGGTTTTCGATTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTATCTCAAGAGAAAAATTCAGCAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCTAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGGCCCAATAGAGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGGCCTATATACTCTTCAAATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAAGGTAGAGCTGCTAAAGGGACTAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCTATTTCAGATTCTAACTCTCCTCCCAAAAAATTCTCAGATAAAAGCTTCTCTCCAAATGATTCATGGGCAATCTGTAGGATCTTCAAGAAAACCAATTCCCTTTCTATGGTACAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAGCATGGTATCTGAATTACTCACACAAGCTACAAATATCAACCAATTCTGTTCAGAAAATAATATCTCATGCACAACAGAACAAGCATCATCAGCAGGGACAAACATTCAAATCAACAAGAATGAGTTACAACAAGTCTCCAATTCCAACAACTTTTCAGCTTTAGATTTTCCAACATACAAACCATTCAACAACATTAACACAATTTCCAAATCCTCACAAATACCTTGTTCTAATGGAGACATTGTTGATAACCTAATGTTCTACACACTTGAAGCCAATGGTTCCACAAAGTGCCCAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATACAAATAATCAATATAGTGGATTCTCAATTAGTCTACCTCAAGATATGCAACCAAACATTGGCTTAGAAACAGAACAATTAGAAGAACAAGGTTGGAGGAAGAATATTCAAGATCAAATGCAGCTTAATCAATGGGACAATCTAGGAAAAACAATTGATTTTCCATTTAGTTTGTCTCCAAATTTTGATGCTTTGAGGACTAGTGGTATATGGGATTCACCACCTTGCACAAGTGAAATGTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1206 0.3599 MEERTEMDNKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSNGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLTQATNINQFCSENNISCTTEQASSAGTNIQINKNELQQVSNSNNFSALDFPTYKPFNNINTISKSSQIPCSNGDIVDNLMFYTLEANGSTKCPIDDSSILSNTNYIGFEDTNNQYSGFSISLPQDMQPNIGLETEQLEEQGWRKNIQDQMQLNQWDNLGKTIDFPFSLSPNFDALRTSGIWDSPPCTSEMSTTYVTSKCYT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00349 401 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Trre12g00349 401 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Trre12g00349 401 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Trre12g00349 401 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Trre12g00349 401 FunFam NAC domain-containing protein 35 23 175 - -
Trre12g00349 401 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00349 Trre-Chr12 2982149 2985246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00349 8 363 NAC Transcription Factor Family AT1G26870 50.135 3.75e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g00349 NAM 5.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00349 - - mtr:25495303 714.916