Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00348 ATGGAAGAAAGAACTGAGATGGACAATAAGGTTGATGATTTGATGCCTGGTTTTCGATTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTATCTCAAGAGAAAAATTCAGCAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAAGAGCTGGCTAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGGCCCAATAGAGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGGCCTATATACTCTTCAAATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAAGGTAGAGCTGCTAAAGGGACTAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCTATTTCAGATTCTAACTCTCCTCCCAAAAAATTCTCAGATAAAAGCTTCTCTCCAAATGATTCATGGGCAATCTGTAGGATCTTCAAGAAAACCAATTCCCTTTCTATGGTACAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAGCATGGTATCTGAATTACTCACACAAGCTACAAATATCAACCAATTCTGTTCAGAAAATAATATCTCATGCACAACAGAACAAGCATCATCAGCAGGGACAAACATTCAAATCAACAAGAATGAGTTACAACAAGTCTCCAATTCCAACAACTTTTCAGCTTTAGATTTTCCAACATACAAACCATTCAACAACATTAACACAATTTCCAAATCCTCACAAATACCTTGTTCTAATGGAGACATTGTTGATAACCTAATGTTCTACACACTTGAAGCCAATGGTTCCACAAAGTGCCCAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATACAAATAATCAATATAGTGGATTCTCAATTAGTCTACCTCAAGATATGCAACCAAACATTGGCTTAGAAACAGAACAATTAGAAGAACAAGGTTGGAGGAAGAATATTCAAGATCAAATGCAGCTTAATCAATGGGACAATCTAGGAAAAACAATTGATTTTCCATTTAGTTTGTCTCCAAATTTTGATGCTTTGAGGACTAGTGGTATATGGGATTCACCACCTTGCACAAGTGAAATGTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1209 0.3598 MEERTEMDNKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKELASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSNGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLTQATNINQFCSENNISCTTEQASSAGTNIQINKNELQQVSNSNNFSALDFPTYKPFNNINTISKSSQIPCSNGDIVDNLMFYTLEANGSTKCPIDDSSILSNTNYIGFEDTNNQYSGFSISLPQDMQPNIGLETEQLEEQGWRKNIQDQMQLNQWDNLGKTIDFPFSLSPNFDALRTSGIWDSPPCTSEMSTTYVTSKCYT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00348 402 FunFam NAC domain-containing protein 35 23 176 - -
Trre12g00348 402 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Trre12g00348 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 241 - -
Trre12g00348 402 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Trre12g00348 402 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Trre12g00348 402 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00348 Trre-Chr12 2982149 2985246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00348 8 364 NAC Transcription Factor Family AT1G26870 50.000 2.67e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g00348 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00348 - - mtr:25495303 710.294