Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00343 ATGGCTGAAGCTTCTGATGTTAAAACTTCATTGCCTGAAGCAGAGAAGAAGAAAGAACAGAGTTTACCCTTTTATCAGCTTTTCTCATTTGCTGATAAATATGATTGGATTCTTATGATCTCAGGAAGTATTGGTGCCATTATTCATGGTTCATCTATGCCTGTTTTTTTTCTTCTTTTTGGTCAAATGGTTAATGGTTTTGGTAAAAACCAAATGGATTTGAAGAAAATGACTGATGAAGTTTCCAAGTATGCACTTTACTTTGTGTACCTTGGCCTTGTTGTATGTATGTCATCTTATGCAGAGATTGCATGTTGGATGTATACTGGAGAGAGACAAGTTAGCACCTTGAGGAAGAAGTATTTGGAGGCAGTGCTTAAACAAGATGTTGGTTTCTTTGATACAGATGCTAGAACAGGAGATATAGTTTTCAGTGTCTCAACTGATACTCTATTAGTCCAAGATGCTATTAGTGAGAAGGTTGGGAATTTCATACATTATCTATCAACTTTTCTGGCTGGACTTGTGGTTGGTTTTATGTCAGCATGGAGATTAGCACTTCTTAGTGTTGCAGTGATTCCTGGAATTGCTTTTGCTGGTGGATTATATGCTTATACACTCACCGGACTTACATCGAAGAGTCGCGAATCATATGCAAATGCCGGCATAATTGCTGAACAGGCAATTGCTCAAGTTCGAACTGTTTACTCTTATGTCGGTGAGAGTAAAGCGCTGAATTCTTATTCTGATGCAATACAAAACACATTGAAGCTTGGATACAAGGCAGGAATGGCTAAAGGTTTAGGTCTAGGATGCACGTACGGTATAGCTTGCATGTCGTGGGCGCTAGTTTTTTGGTATGCCGGAGTTTTTATCAGGAATGGACAAACCGATGGAGGCAAGGCATTCACAGCTATTTTCTCTGCTATTGTCGGTGGAATGAGTTTGGGTCAGTCGTTTTCGAACTTAGGTGCATTTAGCAAAGGCAAAGCAGCCGGATACAAATTGATGGAAATCATCAAGCAGAAACCAACCATAGTCGAAGATCTGTTAGACGGAAAGTGCTTAGCCGAGGTTAATGGCAACATTGAATTTAAAGATGTTAGTTTCAGCTATCCGTCAAGGCCGGATGTGATGATATTTCGAAATTTCTCAATCTTTTTTCCTGCCGGTAAAACTGTTGCGGTTGTTGGTGGTAGTGGTTCTGGAAAGAGTACCGTTGTTTCCTTGATCGAAAGGTTCTATGATCCTAATGACGGTCAGGTTCTGCTCGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGCGATCAAATTGGTTTGGTGAATCAAGAGCCTGCACTATTTGCAACTACAATTCGTGAGAACATACTGTATGGAAAACCTGATGCAACAAATGATGAAATCGAAGCCGCAACTTCTGCCGCAAATGCTCATAGCTTTATTACATTGCTTCCTAATGGCTACAACACTCAGGTTGGAGAGCGAGGAGTTCAATTATCCGGGGGACAAAAACAAAGGATTGCAATTGCGAGAGCTATGTTGAAAAATCCAAAGATCCTTCTCTTAGACGAAGCGACTAGTGCTCTCGATGCAGGATCCGAAAGCATTGTTCAAGAAGCGCTAGACCGTCTCATGGTTGGTAGAACTACCGTGGTCGTCGCTCATCGTTTATCAACAATTAGAAATGTCGACTCTATTGCAGTTATTCAACAAGGGGTAGTTGTCGAGACCGGAACACATGAAGAACTTTTCGCCAAGGGAGGTACCTACGCTTCTCTAATTCGATTCCAAGAAATGGTTGGAAATAGAGACTTCTCGAACCCTTCAACTCGCAGGAATCGTTCGTCACGGTTGAGTCATTCGCTTTCAACAAAGTCTTTAAGCCTAAGGTCAGGAAGCTTGAGGAACTTGAGCTACCAATACAGCACCGGAGCAGACGGTCGCATTGAGATGATCTCAAATGCCGAAACCGATAAGAAAAATCCGGCTCCGGACGGATATTTCTTCCGGTTACTCAAAATGAATGCGCCCGAGTGGCCTTACTCGATAATGGGAGCTGTTGGATCTATTCTTTCTGGATTCATCGGTCCAACTTTTGCTATTGTTATGAGCAATATGATTGAGGTTTTTTACTATAGTAACTATGCATCCATGGAGAAAAAAACTAAGGAATATGTTTTCATATACATCGGTGCCGGTATTTATGCTGTTGGTGCTTACTTGATTCAACATTACTTTTTTAGTATCATGGGAGAAAATCTCACCACAAGAGTTAGAAGAATGATGCTTGCAGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGTCTTGTTGCAGCTCGCCTCGCCACTGATGCAGCTGATGTGAAGTCAGCGATTGCCGAGAGGATATCAGTAATTTTGCAGAACATGACATCTCTTCTCACTTCTTTCATTGTTGCTTTCATTGTTGAATGGAGAGTTTCTTTACTCATCCTTGGAACTTTCCCTCTTCTTGTTCTAGCTAATTTTGCTCAGCAACTATCTCTCAAAGGGTTTGCCGGCGACACAGCGAAGGCTCATGCAAAGACAAGCATGATTGCAGGAGAGGGAGTAAGCAATATCAGAACTGTTGCAGCATTCAATGCACAAAACAAGATGCTATCCACTTTTTGCCATGAGCTACGTGTCCCACAGAGCCAAAGCCTGCGCCGAAGTTTGACATCAGGATTCTTATTTGGCCTATCTCAGCTTGCCCTTTATGCATCCGAAGCTCTCATTCTATGGTACGGTGCACATTTAGTGAGCAAAGGTGTTTCCACATTCTCAAAAGTCATCAAGGTGTTTGTTGTCTTGGTGATCACCGCGAATTCCGTGGCAGAAACCGTTAGCCTTGCTCCGGAGATAATCCGTGGTGGCGAAGCTGTTGGTTCGGTTTTCTCAATCCTTGACCGATCAACTAGAATTGACCCTGATGATCCTGATGCTGAACTGGTTGAATCTGTTCGGGGGGAGATTGAACTTAGACATGTTGATTTCGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAAGATTTCAGCCTTAGAATCCGCGCAGGTCAGAGTCAAGCTCTTGTCGGTGCAAGTGGTTCAGGGAAGAGTTCTGTTATTGCATTGATAGAACGTTTCTACGATCCAATTGTTGGTAAAGTAATGATCGACGGAAAAGACATTAGGAGGTTAAATTTAAAGTCTTTAAGGCTTAAGATTGGTTTAGTGCAACAAGAACCAGCATTGTTTGCATCTAGCATTTTTGACAACATTGCATATGGAAAAGAAGGCGCAACCGAAGCCGAGGTGATCGAAGCTGCCCGCGCGGCCAATGTGCATGGATTTGTGAGTGGTTTGCCCGAAGGTTACAAGACGCCAGTCGGTGAAAGAGGTGTGCAACTCTCCGGTGGTCAAAAGCAAAGGATTGCTATTGCAAGAGCTGTTCTTAAGGACCCAACAATACTTTTACTCGACGAGGCAACAAGTGCGCTCGACGCCGAATCCGAATGTGTACTACAAGAAGCCTTAGAGAGGCTAATGAGGGGTAGAACCACTGTGCTCGTGGCTCATCGTTTGTCTATCATTAGAGGGGTCGATTGCATTGGTGTCGTGCAAGACGGTCGCATTGTTGAGCAAGGAAGTCATTCTGAACTTATTAGTAGGCCAGAAGGAGCTTATTCTAGACTCTTGCAGCTACAACATCATCACATTTGA 3753 0.4293 MAEASDVKTSLPEAEKKKEQSLPFYQLFSFADKYDWILMISGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQMDLKKMTDEVSKYALYFVYLGLVVCMSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFMSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDLLDGKCLAEVNGNIEFKDVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNDGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIRENILYGKPDATNDEIEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGVVVETGTHEELFAKGGTYASLIRFQEMVGNRDFSNPSTRRNRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYSNYASMEKKTKEYVFIYIGAGIYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSTFCHELRVPQSQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAELVESVRGEIELRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFASSIFDNIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSIIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00343 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Trre12g00343 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Trre12g00343 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Trre12g00343 1250 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Trre12g00343 1250 SUPERFAMILY ABC transporter transmembrane region 667 987 IPR036640 GO:0005524|GO:0016020
Trre12g00343 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Trre12g00343 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Trre12g00343 1250 FunFam ABC transporter B family member 1 26 360 - -
Trre12g00343 1250 Pfam ABC transporter transmembrane region 44 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00343 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00343 1250 FunFam ABC transporter B family member 1 665 974 - -
Trre12g00343 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1246 IPR027417 -
Trre12g00343 1250 FunFam ABC transporter B family member 19 975 997 - -
Trre12g00343 1250 SMART AAA_5 390 582 IPR003593 GO:0016887
Trre12g00343 1250 SMART AAA_5 1035 1221 IPR003593 GO:0016887
Trre12g00343 1250 SUPERFAMILY ABC transporter transmembrane region 27 348 IPR036640 GO:0005524|GO:0016020
Trre12g00343 1250 Gene3D ABC transporter type 1, transmembrane domain 26 974 IPR036640 GO:0005524|GO:0016020
Trre12g00343 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Trre12g00343 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Trre12g00343 1250 FunFam ABC transporter B family member 19 353 601 - -
Trre12g00343 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Trre12g00343 1250 Gene3D - 353 601 IPR027417 -
Trre12g00343 1250 Gene3D - 998 1247 IPR027417 -
Trre12g00343 1250 Gene3D ABC transporter type 1, transmembrane domain 975 997 IPR036640 GO:0005524|GO:0016020
Trre12g00343 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00343 1250 PANTHER ABC TRANSPORTER B FAMILY 8 698 IPR039421 -
Trre12g00343 1250 MobiDBLite consensus disorder prediction 607 626 - -
Trre12g00343 1250 FunFam ABC transporter B family member 19 998 1247 - -
Trre12g00343 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Trre12g00343 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00343 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00343 Trre-Chr12 2904859 2914800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00343 13 1246 Calmodulin-binding Proteins AT2G36910 53.791 0.0 1352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00343 K05658 - gmx:100797124 2253.79