Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00340 ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCACCATGACCACCTTCATTCATCTTCATCTTCTCTCAACTCTTTCCCTTCTTTTCCACCTCATCAACACTTTCAAGGTAGTGGTAACCATGGTGGTGCATCTTTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAACAATCACAACAATATGAACAACAAGTGTGATGAATTAATGCATGGAGATGAAGATCAATTATCAGATGATGAAGGTTACTCACAACTTGGTGAAAAGAAGAAGAGATTGAGTTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGAAACAAACTTGAACCTGATAGGAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGAATCTCTTAAGGCTGATAATGATTCCCTTAAGGCTCAAAATCATAAACTTCATGCAGAGCTACAAACTCTAAAGAATAGGGATTGCTTTGAAAATGGAACAATTGGCCTTAAAAAGGAAAATGAATGTTGTTGGAGCAATGGAAGTGATAATAGCTCAGATATGAATCTAGACCTTTCTAGAACACAAGTAATGAACAGTCCTGTAACCATACAGAATGGAAAAAATCTTCTACAAACTTCCCTTAAGCCTACAAGTATGACACAACTTCTTCAATCCTCATCAAGATCTGATCTTCAAGATGAAAGCTTTTGCAATATGTTTCAAAACATTGATGAGCAGCAAAGTTTATGGCCTTGGACTGATCATCAGCAGCACCATTTCCAATAA 885 0.3672 MAFPPSHTFIFQTHEDHHHDHLHSSSSSLNSFPSFPPHQHFQGSGNHGGASFMMKRSMSFSGIENNHNNMNNKCDELMHGDEDQLSDDEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPDRKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLKADNDSLKAQNHKLHAELQTLKNRDCFENGTIGLKKENECCWSNGSDNSSDMNLDLSRTQVMNSPVTIQNGKNLLQTSLKPTSMTQLLQSSSRSDLQDESFCNMFQNIDEQQSLWPWTDHQQHHFQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00340 294 Gene3D - 96 157 - -
Trre12g00340 294 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Trre12g00340 294 MobiDBLite consensus disorder prediction 25 46 - -
Trre12g00340 294 FunFam Homeobox-leucine zipper protein ATHB-13 88 156 - -
Trre12g00340 294 SMART HOX_1 95 156 IPR001356 GO:0003677
Trre12g00340 294 Pfam Homeobox associated leucine zipper 152 192 IPR003106 GO:0006355|GO:0043565
Trre12g00340 294 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Trre12g00340 294 SUPERFAMILY Homeodomain-like 87 154 IPR009057 -
Trre12g00340 294 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Trre12g00340 294 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Trre12g00340 294 Coils Coil 144 192 - -
Trre12g00340 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 285 IPR045224 GO:0003700
Trre12g00340 294 MobiDBLite consensus disorder prediction 16 52 - -
Trre12g00340 294 CDD homeodomain 97 153 IPR001356 GO:0003677
Trre12g00340 294 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00340 Trre-Chr12 2823809 2826504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00340 1 287 Homeobox Transcription Factor Family AT3G01220 50.000 3.78e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g00340 Homeodomain 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00340 K09338 - gmx:100790803 399.823