Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00339 ATGGTTGTTGGTACCCCCAAGTCTTCCACCTCAGGAGTATCAAGATCACCAACTGCTAAGAATATAAGTCCTAATTTATACCAATTCACGTACCAAGATCTAAAGGTAGCGACAAAGAACTTCCTACCAGAATTGTTTCTCGGAGAAGGAGGTTTCGGTTCTGTGTACAAAGGTTGGATCACTCTAAATGAGAGATCCAGATTAGAGATCCCAATAGCAGTGAAAACCCTCGATGCAAATGGCTTACAAGGCCACAAAGAATGGGAGGCTGAAATTAACCATCTTGGAGCTCTCTGGCATCCCAATTTGGTGAAACTTATTGGCTATTGTATTGAAGATGAGCATAGGGTGCTTGTTTATGAGTTTATGCCAAGAGGAAGCTTGGAAAATTATCTGTTTAATAGACATAGAACACCTCTCACATGGGGTGTAAGAATGAAAACTATGCTTGGTGCTGCAAAAGGACTTGCATTTCTACATGAGGAATCTAAAAAGCCACTCATATATAGAGATTTCAAAACTTCCAACATCTTATTAGATTCGGAATTCAATGCCAAACTTTCTGATTTTGGGTTAGCTAAAGATGCTCCAGTGGGAGACAAGACTCATGTGTCAACTCAAGTGATTGGAACTCGAGGCTATGTAGATCCTGAGTATGTAATGACAGGACACCTTACATCCAAGAATGATGTCTACAGTTTTGGTGTGGTACTCCTTGAGATGTTAACAGGAAGAAAAGCAATTGACCAAAGAAGGCCAAAAAATGAACAATTTTTGGTTGAATGGGTAAAACCATTTTTAAAACAATATGGAGGAGAGTTCTATCAAATAATGGATCCTAATGTCCAAGGACAATACACAAAAAGAGCTGCTTACAAAGCGATAAAGATAGCGGTAAATTGTATTTACCGTGACTTAAAATCACGACCCTTAATGAGTGAAGTCGTTAAGGAGCTCAAGAATATTCTCGATTATAATGACATGCCTGGTTCACCATTACCGCCACCACCATTATCGTTTAAGGGATCAGATGCTGGTGCTTCCTCTAGTCATGGTGGCGGCAGTGCTAACAAATATGATCGAAATGTTGGTTCGTCATCTTCAGCTATGTCTACTCCGAATCGGTTTCAGGGTTCGCCATTAATGTTTACCCCTCCTTTTCTTTCACCAACTCCTCCTCGTGGTGGAAACCCTTGA 1197 0.4043 MVVGTPKSSTSGVSRSPTAKNISPNLYQFTYQDLKVATKNFLPELFLGEGGFGSVYKGWITLNERSRLEIPIAVKTLDANGLQGHKEWEAEINHLGALWHPNLVKLIGYCIEDEHRVLVYEFMPRGSLENYLFNRHRTPLTWGVRMKTMLGAAKGLAFLHEESKKPLIYRDFKTSNILLDSEFNAKLSDFGLAKDAPVGDKTHVSTQVIGTRGYVDPEYVMTGHLTSKNDVYSFGVVLLEMLTGRKAIDQRRPKNEQFLVEWVKPFLKQYGGEFYQIMDPNVQGQYTKRAAYKAIKIAVNCIYRDLKSRPLMSEVVKELKNILDYNDMPGSPLPPPPLSFKGSDAGASSSHGGGSANKYDRNVGSSSSAMSTPNRFQGSPLMFTPPFLSPTPPRGGNP 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00339 398 ProSitePatterns Protein kinases ATP-binding region signature. 47 75 IPR017441 GO:0005524
Trre12g00339 398 CDD STKc_IRAK 47 322 - -
Trre12g00339 398 Gene3D Phosphorylase Kinase; domain 1 5 122 - -
Trre12g00339 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Trre12g00339 398 MobiDBLite consensus disorder prediction 343 379 - -
Trre12g00339 398 PANTHER OS01G0588500 PROTEIN-RELATED 19 321 - -
Trre12g00339 398 ProSiteProfiles Protein kinase domain profile. 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00339 398 MobiDBLite consensus disorder prediction 327 398 - -
Trre12g00339 398 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 123 331 - -
Trre12g00339 398 SUPERFAMILY Protein kinase-like (PK-like) 22 338 IPR011009 -
Trre12g00339 398 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Trre12g00339 398 Pfam Protein tyrosine and serine/threonine kinase 47 319 IPR001245 GO:0004672|GO:0006468
Trre12g00339 398 FunFam Serine/threonine-protein kinase BIK1 8 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00339 Trre-Chr12 2806299 2809020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00339 6 319 Glycoside Hydrolase AT3G07070 49.057 2.03e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre12g00339 PK_Tyr_Ser-Thr 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00339 - - mtr:25490803 545.814