Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00338 ATGGCAGATTCAAGATTTTGGATGAAGTTCAAGCTTTTATTTAGTTGTATATCCATAAGCTCATCTCGAGGAAATCACACAAAAAATGATGACATGGTTGTTGGTACCCCCAAGTCTTCCACCTCAGGAGTATCAAGATCACCAACTGCTAAGAATATAAGTCCTAATTTATACCAATTCACGTACCAAGATCTAAAGGTAGCGACAAAGAACTTCCTACCAGAATTGTTTCTCGGAGAAGGAGGTTTCGGTTCTGTGTACAAAGGTTGGATCACTCTAAATGAGAGATCCAGATTAGAGATCCCAATAGCAGTGAAAACCCTCGATGCAAATGGCTTACAAGGCCACAAAGAATGGGAGGCTGAAATTAACCATCTTGGAGCTCTCTGGCATCCCAATTTGGTGAAACTTATTGGCTATTGTATTGAAGATGAGCATAGGGTGCTTGTTTATGAGTTTATGCCAAGAGGAAGCTTGGAAAATTATCTGTTTAATAGACATAGAACACCTCTCACATGGGGTGTAAGAATGAAAACTATGCTTGGTGCTGCAAAAGGACTTGCATTTCTACATGAGGAATCTAAAAAGCCACTCATATATAGAGATTTCAAAACTTCCAACATCTTATTAGATTCGGAATTCAATGCCAAACTTTCTGATTTTGGGTTAGCTAAAGATGCTCCAGTGGGAGACAAGACTCATGTGTCAACTCAAGTGATTGGAACTCGAGGCTATGTAGATCCTGAGTATGTAATGACAGGACACCTTACATCCAAGAATGATGTCTACAGTTTTGGTGTGGTACTCCTTGAGATGTTAACAGGAAGAAAAGCAATTGACCAAAGAAGGCCAAAAAATGAACAATTTTTGGTTGAATGGGTAAAACCATTTTTAAAACAATATGGAGGAGAGTTCTATCAAATAATGGATCCTAATGTCCAAGGACAATACACAAAAAGAGCTGCTTACAAAGCGATAAAGATAGCGGTAAATTGTATTTACCGTGACTTAAAATCACGACCCTTAATGAGTGAAGTCGTTAAGGAGCTCAAGAATATTCTCGATTATAATGACATGCCTGGTTCACCATTACCGCCACCACCATTATCGTTTAAGGGATCAGATGCTGGTGCTTCCTCTAGTCATGGTGGCGGCAGTGCTAACAAATATGATCGAAATGTTGGTTCGTCATCTTCAGCTATGTCTACTCCGAATCGGTTTCAGGGTTCGCCATTAATGTTTACCCCTCCTTTTCTTTCACCAACTCCTCCTCGTGGTGGAAACCCTTGA 1290 0.3992 MADSRFWMKFKLLFSCISISSSRGNHTKNDDMVVGTPKSSTSGVSRSPTAKNISPNLYQFTYQDLKVATKNFLPELFLGEGGFGSVYKGWITLNERSRLEIPIAVKTLDANGLQGHKEWEAEINHLGALWHPNLVKLIGYCIEDEHRVLVYEFMPRGSLENYLFNRHRTPLTWGVRMKTMLGAAKGLAFLHEESKKPLIYRDFKTSNILLDSEFNAKLSDFGLAKDAPVGDKTHVSTQVIGTRGYVDPEYVMTGHLTSKNDVYSFGVVLLEMLTGRKAIDQRRPKNEQFLVEWVKPFLKQYGGEFYQIMDPNVQGQYTKRAAYKAIKIAVNCIYRDLKSRPLMSEVVKELKNILDYNDMPGSPLPPPPLSFKGSDAGASSSHGGGSANKYDRNVGSSSSAMSTPNRFQGSPLMFTPPFLSPTPPRGGNP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00338 429 ProSitePatterns Protein kinases ATP-binding region signature. 78 106 IPR017441 GO:0005524
Trre12g00338 429 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00338 429 SUPERFAMILY Protein kinase-like (PK-like) 53 369 IPR011009 -
Trre12g00338 429 Pfam Protein tyrosine and serine/threonine kinase 78 350 IPR001245 GO:0004672|GO:0006468
Trre12g00338 429 MobiDBLite consensus disorder prediction 358 429 - -
Trre12g00338 429 MobiDBLite consensus disorder prediction 374 410 - -
Trre12g00338 429 Gene3D Transferase(Phosphotransferase) domain 1 154 360 - -
Trre12g00338 429 FunFam Serine/threonine-protein kinase BIK1 39 153 - -
Trre12g00338 429 Gene3D Phosphorylase Kinase; domain 1 34 153 - -
Trre12g00338 429 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 362 - -
Trre12g00338 429 PANTHER OS01G0588500 PROTEIN-RELATED 43 352 - -
Trre12g00338 429 MobiDBLite consensus disorder prediction 27 48 - -
Trre12g00338 429 CDD STKc_IRAK 78 353 - -
Trre12g00338 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00338 Trre-Chr12 2806299 2810338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00338 37 350 Glycoside Hydrolase AT3G07070 49.057 6.15e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre12g00338 PK_Tyr_Ser-Thr 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00338 - - mtr:25490803 547.74