Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00328 ATGGAAATGATAATAAAGACTGAAGAGAACAAGAGAAGGAAATTTATTTCCATGGCGGACGATGATTTTCAAGTTATTGCTAAGAGACGACGAAGAGAGCCAGCAGTGGCTCAGGCTGCACTTACTTCTGAGGAAAACCAAGGTCAGAATCAACAAGTTTGTCAAAATTCTACTACCAACACCACAAAGAGAAGTTCAAGATTTCGTGGTGTCAGCAGACATCGATGGACAGGTCGATATGAAGCTCACTTATGGGATAAACTCTCTTGGAACATGACCCAAAAGAAGAAAGGGAAGCAAGTTTATCTTGGGGCTTACGATGACGAAATATCAGCAGCCAGAGCATATGATTTAGCTGCACTAAAGTATTGGGGAACATTGACTGTCACCAATTTTCCTGTCTCTGAGTATGAGGAACAGGTAGAGATAATGCAAACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGGGCATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAACGGTAGATGGGAAGCAAGGATCGGAAGGGTTTTCGGAAACAAATATCTCTACCTCGGAACCTACAGCACCCAAGAAGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGAGCCATGCGATAACAAACTTCGACTTGAGTACTTACATGAGATGGTTAAAATCATCAGCAGGAAATATCTCAGAACCAAAACTTGAAAAACTGGAAGTACCAGAGTCTCAGACAGTGGCATCCCAATCTAACTATTCCCCGATAGAGGGGTCGAAATCCTTGGCCCTCCACAACAGTACTTACAATCCAAATCATCTGAATTCACCTCAAACGTATGAAGTTTTTGGCAATAACATCTCCAGCACTAAGTCGTCTTCTTCTCCAACTGCACTTGGGCTCCTTTTCCGGTCAACAATATTTAGAGAATTAGTTGAAAAGAATTTGAACATATCTAGAGATGAAACTGAAGGGGAAGACACAAAGGATCAACAGCCACAGACGGAAAGTGGTGTTAATGATGAGTTGGATGGGATCTTCTATGATGGAACTGGGTTATCCCCTTACTGA 1104 0.4266 MEMIIKTEENKRRKFISMADDDFQVIAKRRRREPAVAQAALTSEENQGQNQQVCQNSTTNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNMTQKKKGKQVYLGAYDDEISAARAYDLAALKYWGTLTVTNFPVSEYEEQVEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGSHAITNFDLSTYMRWLKSSAGNISEPKLEKLEVPESQTVASQSNYSPIEGSKSLALHNSTYNPNHLNSPQTYEVFGNNISSTKSSSSPTALGLLFRSTIFRELVEKNLNISRDETEGEDTKDQQPQTESGVNDELDGIFYDGTGLSPY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00328 367 MobiDBLite consensus disorder prediction 37 68 - -
Trre12g00328 367 Pfam AP2 domain 66 125 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 Pfam AP2 domain 168 219 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 CDD AP2 168 229 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 Gene3D AP2/ERF domain 66 135 IPR036955 GO:0003700|GO:0006355
Trre12g00328 367 Gene3D AP2/ERF domain 168 229 IPR036955 GO:0003700|GO:0006355
Trre12g00328 367 MobiDBLite consensus disorder prediction 328 367 - -
Trre12g00328 367 MobiDBLite consensus disorder prediction 328 342 - -
Trre12g00328 367 FunFam AP2-like ethylene-responsive transcription factor 66 135 - -
Trre12g00328 367 FunFam AP2-like ethylene-responsive transcription factor 168 229 - -
Trre12g00328 367 SUPERFAMILY DNA-binding domain 168 229 IPR016177 GO:0003677
Trre12g00328 367 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 SUPERFAMILY DNA-binding domain 66 135 IPR016177 GO:0003677
Trre12g00328 367 CDD AP2 66 135 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 296 - -
Trre12g00328 367 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 MobiDBLite consensus disorder prediction 40 66 - -
Trre12g00328 367 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Trre12g00328 367 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00328 Trre-Chr12 2755309 2757645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00328 63 231 AP2-EREBP Transcription Factor Family AT5G57390 69.822 2.17e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre12g00328 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00328 - - ahf:112716370 516.538