Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00326 ATGAGCAATGAGATTGGACAGAAACCTCCACCTTCAATACTCGTTGGTCGATTCAAGGCTTTGTTGAAGCAACGTGAAGATGATCATAGGTTGAGAAATTCGCAACCTTCAACTGAAGAAATTGTTCAGATTTACGAGTTGTTGTTATCTGAACTCACTTGTAATGTTAAACCTATCATTACTGATCTTACAATCATTGCTGAACAACATCGTGAACATGCTAAAGGAATCGCTTATGCTATTTGCGCTCGTATTCTTGAGGTTTCTGCAGATCAAAAGCTTCCTTCACTCTACCTCTTGGACAGTATTGTGAAGAATATTGGCCAGGAATATATTCAACACTTCTCATTACGTCTTCCTGAAGTTTTCTGCGAGGCATACAGACAGGTTAATCCAAGTTTGCATTCTGCTCTGCGTCATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCTTGCGTAAAATTGATGGACAGTTACAATTTTCTCAAGCAGTTAATAATCAATCATCAAACGTTAATCCCCTCAGGGCTTCTGAATCACCTCGACCAACTCATGGGATACATGTTAACCCAAAATACATAAGACAAATGGAACATTCTACTTCAATTATGGATAGTGTTGTAGGTGAAAGATTAGACTCAACAAGAACTGTAGGAAATGCAAATTTAGGCCTTGTAGCTAGTAAGATTAGTCAATTTGTCCCAAGTAGGGTTAGAAGATCCTCATCACCATCAAGAATTGGACTTGATAGGCATATGCCCTCATATGTGGACGAATATGTAGCTGACAATTCTACTGGTAGGACAGTTGAGAGAGAATCTCCTCATCGTGCTGTTGATTATGGACTAGTTAAAGGATTAAGTAGAGAAGAAGAGTTGAGTGATTGGCCACAAAAGCAATTTTCTGGTGATGGTCGGAAGAGATTTCAAACTTCTATGACATACAGTCTTAGTAACGGACAAACGCGTCAAAATCCAAGAGCCCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGACAGAAATGGTATGGATAAGGTTATTTCAACATCATGGCAAAATACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCTACTCTAGTAGACCACAGTAGAAATAATAGTTTCCAGCAACCAACTATTGGATTCGCCTCAGAAAAGCCTGTTATTGTCGCAGCAAGTGCAACTTCTTCGGTGTCAAGGATGTTTCCTAGTCTCACGCCTAATATTGAGTACCGTCCACCAGTTTTGCCGGCAACTTTTGAAATGAGACACTCTATAAATGTGCATGCTCCTCGTCCTCCGAGCTTAAATCCTATATTTCCATTGAAGAATCCTGTTAGAAGTCCATTTGAATCAATAAATGCTAACAGTACCATTGTGAGTCATGGTCTAAATAGACCTTTTCCAAATCAAGACCAATTGTTGCACGGTGTTGAGAACAATGATATCAGTAAAAGAAACATGCATCAGTTACCTAATCACCCTGCTGGTCTGATTTCATCTAATCCGCAAAGCAGCGGACAAACACCACAATTGCCGTTTTTTCCATCTCAGGATCCGGCAGCATCACAATTTACTTATAGGCCCTCTTTTCAAGGACATGGTGCTTCTATAAGTAACCCCCTGTCAAATGTACGCCCTGTTATGCCACTCCCTTTGTTAGGCCAAAGAATCGCAAACAACCCTTTACATTTCCAAGGGGGGCCATTGCGACCTTTTCCTCCAGCCGGCCCACATGCTCCACCCCAGATGCTGCCTCATCCCAATCCTAGTCCTTTTGTGTCAAGCCAACAGCCATCTGGTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTACACAGGATTTTTTTGGCATTGAGTTTGATCCTGATATTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCTCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTCAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGGTTTTTTACCGACCGAGACCACCGAGGAAAAGAAAGAAGATGAAGAGTTGGCAGTTCCTGCTGAAGAGGATCAGAATACATGTGCATTATGTGGAGAGCTTTTCGAGGAGTTTTACAGTGATGAGACAGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAATAACAGGCATGGACAGGTCACATTTAGGGCCCATTATTCATGCCAAATGCAGATCTGAATCTACTACCTCCCCATCTGAAGATTTTGTGATGGATGAAGGGGGCACATATGAAGTAGGCAATCAAAGAAAACGAATGCGGGAATGA 2523 0.4213 MSNEIGQKPPPSILVGRFKALLKQREDDHRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHREHAKGIAYAICARILEVSADQKLPSLYLLDSIVKNIGQEYIQHFSLRLPEVFCEAYRQVNPSLHSALRHLFGTWSKVFPPSVLRKIDGQLQFSQAVNNQSSNVNPLRASESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLDSTRTVGNANLGLVASKISQFVPSRVRRSSSPSRIGLDRHMPSYVDEYVADNSTGRTVERESPHRAVDYGLVKGLSREEELSDWPQKQFSGDGRKRFQTSMTYSLSNGQTRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVISTSWQNTEEEEFDWEDMSPTLVDHSRNNSFQQPTIGFASEKPVIVAASATSSVSRMFPSLTPNIEYRPPVLPATFEMRHSINVHAPRPPSLNPIFPLKNPVRSPFESINANSTIVSHGLNRPFPNQDQLLHGVENNDISKRNMHQLPNHPAGLISSNPQSSGQTPQLPFFPSQDPAASQFTYRPSFQGHGASISNPLSNVRPVMPLPLLGQRIANNPLHFQGGPLRPFPPAGPHAPPQMLPHPNPSPFVSSQQPSGGYSNLINSLMAQGVISLANQAPTQDFFGIEFDPDILKVRHESAISALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAPGFLPTETTEEKKEDEELAVPAEEDQNTCALCGELFEEFYSDETEEWMYRGAVYLNAPNGIITGMDRSHLGPIIHAKCRSESTTSPSEDFVMDEGGTYEVGNQRKRMRE 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00326 840 MobiDBLite consensus disorder prediction 503 541 - -
Trre12g00326 840 MobiDBLite consensus disorder prediction 589 618 - -
Trre12g00326 840 MobiDBLite consensus disorder prediction 589 611 - -
Trre12g00326 840 MobiDBLite consensus disorder prediction 812 840 - -
Trre12g00326 840 FunFam polyadenylation and cleavage factor homolog 4 34 162 - -
Trre12g00326 840 Pfam CID domain 55 156 IPR006569 -
Trre12g00326 840 SMART 558neu5 40 162 IPR006569 -
Trre12g00326 840 Gene3D - 30 162 IPR008942 -
Trre12g00326 840 ProSitePatterns Zinc finger C2H2 type domain signature. 674 694 IPR013087 -
Trre12g00326 840 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Trre12g00326 840 CDD CID_Pcf11 45 162 IPR047415 -
Trre12g00326 840 SUPERFAMILY ENTH/VHS domain 36 162 IPR008942 -
Trre12g00326 840 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 36 820 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00326 Trre-Chr12 2743822 2748634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00326 612 839 C2H2 Transcription Factor Family AT4G04885 69.737 7.84e-105 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g00326 CID 3e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00326 K14400 - gmx:100794796 859.366