Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00324 ATGGCACAAATTTCTACTAAGGTTTTGTTTATTCTCTTGGTTACTTTTGCCATTATTATTCCATGCCTTGAGGCTGGGATTGGTGAATTTGATGATTTTCTTAAAGCGGAAGCTGAAGAAGCCCATAAAATTGCTCTTCAATCTTATATTCCACTTCCACTTGGACATGATAATCATTTCCATGTCCATGGTCACTTATCAATAATGGAAGAAGCAACACGGAGGGAATTGAAGCAAAAATATGCTGGAAAACAAAAAGTACCATGTGAAGCACCAATTGATAATTGTTGGAGGTGCAAAGCAAATTGGGCAAAAAATCTATATAAGTTAGCCAAATGTGGCAAGGGCATTGGAAATTAA 360 0.3639 MAQISTKVLFILLVTFAIIIPCLEAGIGEFDDFLKAEAEEAHKIALQSYIPLPLGHDNHFHVHGHLSIMEEATRRELKQKYAGKQKVPCEAPIDNCWRCKANWAKNLYKLAKCGKGIGN 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00324 119 Pfam Pectate lyase, N terminus 27 77 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00324 Trre-Chr12 2725118 2725686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00324 9 118 Polysaccharide Lyase AT1G14420 36.364 1.79e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00324 K01728 - gmx:100780236 145.976