Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00323 ATGGGAAAAATAATGGCACAAATTTCTACTAAGGTTTTGTTTATTCTCTTGGTTACTTTTGCCATTATTATTCCATGCCTTGAGGCTGGGATTGGTGAATTTGATGATTTTCTTAAAGCGGAAGCTGAAGAAGCCCATAAAATTGCTCTTCAATCTTATATTCCACTTCCACTTGGACATGATAATCATTTCCATGTCCATGGTCACTTATCAATAATGGAAGAAGCAACACGGAGGGAATTGAAGCAAAAATATGCTGGAAAACAAAAAGTACCATGTGAAGCACCAATTGATAATTGTTGGAGGTGCAAAGCAAATTGGGCAAAAAATCTATATAAGTTAGCCAAATGTGGCAAGGGCATTGGAAATTAA 372 0.3602 MGKIMAQISTKVLFILLVTFAIIIPCLEAGIGEFDDFLKAEAEEAHKIALQSYIPLPLGHDNHFHVHGHLSIMEEATRRELKQKYAGKQKVPCEAPIDNCWRCKANWAKNLYKLAKCGKGIGN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00323 123 Pfam Pectate lyase, N terminus 31 81 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00323 Trre-Chr12 2725118 2725698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00323 13 122 Polysaccharide Lyase AT1G14420 36.364 2.05e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00323 K01728 - gmx:100780236 145.976