Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00315 ATGGGGTTTAGAAATAAAAATGCAATCAAAGCAGGAAGTTTGAAATTTGATAAGTCAAAGGATGATGTTGCAAAGAAAAAGAGAAATTGTTGCTTTAGATTCAGTTTTATTAGATGCTGCATACCTTCAAGATCAAAATTTGATAGCTCAATATGTTGCAATGGCACTGCTAATACACAAATTGGTGATAAAGATAATACTAAGTCAGTAATAATTCAATCAGAGGAAAATAAATCTGCATCTGAAACAAATACAAAGGAAACAAATGGTCTTGTAGATTCCTCTACATCAACTAGTAATGGGGAAAGTATCTCTTCGACATCGAAATTCAGTGAAGAATTGAAGGTTGCTTCTTGTTTAAGAAAATTCACATTCAATGGACTTAAGGTAGCAACTAGGAATTTCAGACCAGAGAGTCTTCTAGGTGAAGGAGGGTTTGGTTGTGTTTTCAAAGGTTGGATTGAAGTGAATGGAACTGCACCCGTGAAACCGGGTACCGGCCTTACGGTTGCTGTGAAAATCCTCAACCATAATGGACATCAAGGTCACAAAGAATGGCTTGCTGAACTAAACTATCTCGGCGATCTTGTTCATCCTAATCTCGTTAAGTTGATAGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCGCGAGGAAGTTTGGAGAATCACCTCTTCAGAAGACCCTTGCCTCTACCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCTAAAGGTCTTGCTTTTCTCCACGAAGGAGCTCAAAGGCCTGTGATATATCGCGATTTCAAGACATCTAATATTCTATTAGATGCGGAATACAATGCGAAGCTTTCTGATTTTGGACTTGCCAAAGATGCTCCTGAGGGGGAAAAAACACATGTATCAACAAGAGTTATGGGAACGTATGGTTATGCTGCTCCGGAATATGTGATGACGGGACATTTATCATCGAAAAGTGATGTCTACAGCTTTGGAGTAGTACTACTTGAAATGCTTACTGGTCGACGAGCTATTGACAAGAAAAGACCAAAAGGAGAGCATAATCTGGTGGAGTGGGCAAGACCAGTACTTGGAGACAGGAGGTCGTTCTACCGAATAATCGATCCCCGTCTTGAAGGTCACTTTTCAGTCAAAGGATCACAGAAAGCAGCACAGCTGGCTTCTCAGTGCCTTAGTCGCGATCCAAAATCCAGACCTTTGATGAGTGAAATTGTTCAAGCTTTAAAGCCTTTGCCAAACCTTAAGGATATGGCCATATCATCTCATCAATTCAAGATTGCGCGTGTTGATCGTACCATGTCCATGCCGAATTCTAAAAACGGTATTAGAACCGATATAGTATCTTTACCAAAGGGTCAGCCGAAAAGGACCTTGTCAAGTTCACATTATGGACATGCTTCTCCGTATCCGCATCATAGCAAGTCTCCAAAACCTATTGCGTGA 1464 0.403 MGFRNKNAIKAGSLKFDKSKDDVAKKKRNCCFRFSFIRCCIPSRSKFDSSICCNGTANTQIGDKDNTKSVIIQSEENKSASETNTKETNGLVDSSTSTSNGESISSTSKFSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEVNGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEGAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDAPEGEKTHVSTRVMGTYGYAAPEYVMTGHLSSKSDVYSFGVVLLEMLTGRRAIDKKRPKGEHNLVEWARPVLGDRRSFYRIIDPRLEGHFSVKGSQKAAQLASQCLSRDPKSRPLMSEIVQALKPLPNLKDMAISSHQFKIARVDRTMSMPNSKNGIRTDIVSLPKGQPKRTLSSSHYGHASPYPHHSKSPKPIA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00315 487 MobiDBLite consensus disorder prediction 442 487 - -
Trre12g00315 487 Gene3D Phosphorylase Kinase; domain 1 105 220 - -
Trre12g00315 487 Pfam Protein kinase domain 138 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00315 487 FunFam Probable serine/threonine-protein kinase PBL8 221 435 - -
Trre12g00315 487 PANTHER OS01G0588500 PROTEIN-RELATED 89 418 - -
Trre12g00315 487 CDD STKc_IRAK 141 418 - -
Trre12g00315 487 SUPERFAMILY Protein kinase-like (PK-like) 110 415 IPR011009 -
Trre12g00315 487 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Trre12g00315 487 MobiDBLite consensus disorder prediction 74 105 - -
Trre12g00315 487 Gene3D Transferase(Phosphotransferase) domain 1 221 439 - -
Trre12g00315 487 FunFam Serine/threonine-protein kinase BIK1 102 220 - -
Trre12g00315 487 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00315 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00315 Trre-Chr12 2673495 2676580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00315 87 427 Glycoside Hydrolase AT3G07070 51.873 5.62e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre12g00315 Pkinase 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00315 - - gmx:100499647 756.133