Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00306 ATGAATATCATCAAAACAAACAAGGCTTGTGCTGCTTGCAAATATCAAAGACGAAAATGCTCTAAAGACTGTCCTTTAGCTCCTTATTTTCCGGCTGATAAACCAAAAATGTTCGGCAATGCTCATCGTTTGTATGGCGTTTCAAACATATTGAAGATACTAAAGGATATTGACGATGATAAAAAAGACGATGCAATGAAATCAATTATTTTTGAGTCGGATATTCGCGCAAAATTTCGGGTTCATGGATGTTTTGGTGTTATTAAATACTATGAAGATTTGATTAAGGAGTCTATTAAAGAGTTAGATGATGTAGAAAGTTTACTAGATTATTGTAAGCTAAATTACCCTCTACAACAACAAAATCTTCATTCTTCGGTTACTAATTATCAAATTCCAAATATTCCAATATTAAACAATATTGGTGATGCTTCTAATTATTATCACGATAGTGAAAATAATCATGATACAATGATGAGAGCTTCTTCTTCTTATATAAATATACCTCATGATGTTAAGAATATTCAAATTGATCATACAAATTTGAATATAATAAATTCTACAGATACAACAAGGGTTGTACAATTGAGTGATCTAAGCAATAGTGGTGGTGACAATGTCATGGAAGATAATTATGATGAAGAATTAAAGCTTGATGGTGGTGTTGATGCACAAATCAGTACTGATTTTGATTTTAGGAAAAAAGAAAGATTATTAGATGGTGATAAATTAGCCATTTCGGATTATGAACTTGATATGTTTATTAATTATGGTAGACAATCATTTGTGCAAAAGGATGCAGCTGAATTCAGCAGTGTGGAATCAAACCAATCGCAGAATGATCAGTTGAAGAACTTGACGCAAATGGAAACAAGCACTCCATCTGAAGTGAGCAAATAA 900 0.3167 MNIIKTNKACAACKYQRRKCSKDCPLAPYFPADKPKMFGNAHRLYGVSNILKILKDIDDDKKDDAMKSIIFESDIRAKFRVHGCFGVIKYYEDLIKESIKELDDVESLLDYCKLNYPLQQQNLHSSVTNYQIPNIPILNNIGDASNYYHDSENNHDTMMRASSSYINIPHDVKNIQIDHTNLNIINSTDTTRVVQLSDLSNSGGDNVMEDNYDEELKLDGGVDAQISTDFDFRKKERLLDGDKLAISDYELDMFINYGRQSFVQKDAAEFSSVESNQSQNDQLKNLTQMETSTPSEVSK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00306 299 MobiDBLite consensus disorder prediction 268 299 - -
Trre12g00306 299 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Trre12g00306 299 Pfam Lateral organ boundaries (LOB) domain 9 104 IPR004883 -
Trre12g00306 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00306 Trre-Chr12 2596698 2598065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00306 6 109 AS2 family AT3G47870 55.769 5.44e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g00306 LOB 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00306 - - tpra:123910294 458.373