Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00305 ATGAATATCATCAAAGCATACAAGTCTTGTGCAGCTTGCAAGTATCAAAGAAGAAAGTGTTCTAAAGATTGTCCGTTAGCTCCTTATTTTCCGGGCGATAAACCTAAAATATTCGCTAATGCTCATCGGTTGTTCGGTGTTTCTAATATTTTAACAATATTGAAAGTGGTTAAAGACGAAGATAAAAATGAAGCAATGAAATCAATTATTTTTGAATCGGATATTCGTGCAAGATTTCAAACTCATGGATGTCTTGGGGTTATTAAGATGTATGAAAGTGCGTTAAAGGAGTGTATTAAAGAGTTAGATGATGTAGAAAGGTTACTAGATTATTGTAAGTTAAATTGTCACTCCGTACCTTCTACTAGTAATCACAATATTGGTGATATCATCCCTCCTATTGATGGTGACTATGCCATGGAAGACAATACTAATTTAATGGGAACAAAAGGATTATCCCATAATGAAGAATTAGTTCTTGATACAAAAATTGATACAACTTTTGATTCGGGGAAAGAGGAAATATTTTCAGATTATAATATTGATATTGATGATCTTATTTACTTTGGACAACCATTTGAAGAAAAGGATGCATCTCAATTCAGCAGTGTTTTTTCAATTGACCAAACGCAGAATGACCAGTTGAAGAACATAATGGATGCATTTGATATGGAAACTAGCATTCCAGCTTAA 693 0.329 MNIIKAYKSCAACKYQRRKCSKDCPLAPYFPGDKPKIFANAHRLFGVSNILTILKVVKDEDKNEAMKSIIFESDIRARFQTHGCLGVIKMYESALKECIKELDDVERLLDYCKLNCHSVPSTSNHNIGDIIPPIDGDYAMEDNTNLMGTKGLSHNEELVLDTKIDTTFDSGKEEIFSDYNIDIDDLIYFGQPFEEKDASQFSSVFSIDQTQNDQLKNIMDAFDMETSIPA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00305 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
Trre12g00305 230 Coils Coil 88 108 - -
Trre12g00305 230 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Trre12g00305 230 Pfam Lateral organ boundaries (LOB) domain 9 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00305 Trre-Chr12 2580572 2581571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00305 9 109 AS2 family AT3G47870 53.465 1.27e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g00305 LOB 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00305 - - tpra:123910294 219.164