Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00304 ATGGATATTCAACAAAAAAGAAAGGCTTGTGCTGCATGCAAATATCAAAGAAGAGGGTGTTCAAGAAATTGTCTTTTAGCTCCGTATTTTCCGGCCGATAAACCAAAAGAGCTTCTCAATGCTGTTCGTTTGTTTGGTATTTCGAACATACGAAATACACTAAAGGAGATCAAGGATGATCGTGATAAAAATAATATGATGAAATCGATTATTTTTGAATCGGATATGCGTGCAAGATACCCGATTCATGGATGTCTTGGCATTATTAAGATGTATGAAGGTATGATAAAGGAGTCTTTGCAAGAGTTAGATCATGTAGAAGAGTTACTAAGTTTATGTAAGCTATTACAACAACAAAATCTTCTACATTTCTTTTCAATGGATCCTTCTTTGGTACCTTCTACTAGTTCTCAAATTCCAAATTTTCCAATTTGTAACAATGATGGTAACATCCTCTCTCTTGATGTTAACAATCAAGTTCTTGGGAATCTTGATGATAACAACACTTCTTGTATGCAAAATTATCCTTTGCAGCAACAAAATATTCTACCTTATTTTTCAACGAATCATTCTTCGGTACCTTCTACTAATTCTCAAATTTCCGATATTTTACCTTACTTTTCGATGAATCATTCTTTGGTACCTTCTCCTAGTTCTCAAATTCCCAATATTGTACCTTACTTTTCGATGAATCATTCTTCGGTACCATCTACTAGTTCTCAAATTCCCAATTTTCCTATATCTAACAATGTTGGTGACATCATCTCTCATGATGTTAACAATACTACAAGTGATACAACAATGATTGCAGAATTTAGTGGTGGTGACAACATTGCACAGGGAGAATCTGATCATGATCATGAATTGGACTTTCATGGTGGTGTGTTCATTCCCAAGGATCATCTTAAGTGA 912 0.3443 MDIQQKRKACAACKYQRRGCSRNCLLAPYFPADKPKELLNAVRLFGISNIRNTLKEIKDDRDKNNMMKSIIFESDMRARYPIHGCLGIIKMYEGMIKESLQELDHVEELLSLCKLLQQQNLLHFFSMDPSLVPSTSSQIPNFPICNNDGNILSLDVNNQVLGNLDDNNTSCMQNYPLQQQNILPYFSTNHSSVPSTNSQISDILPYFSMNHSLVPSPSSQIPNIVPYFSMNHSSVPSTSSQIPNFPISNNVGDIISHDVNNTTSDTTMIAEFSGGDNIAQGESDHDHELDFHGGVFIPKDHLK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00304 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 173 - -
Trre12g00304 303 Coils Coil 302 303 - -
Trre12g00304 303 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Trre12g00304 303 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00304 Trre-Chr12 2577937 2578848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00304 9 114 AS2 family AT3G47870 49.057 7.37e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g00304 LOB 2.1e-29 No_clan