Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00296 ATGGGAAGGCCTCCTTGTTGTGATAAATCCAATGTGAAAAGGGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTAGCCAAACATGGTATTGGAAATTGGACTTTGGTTCCAAAGATAGCAGGGCTTAATAGGTGTGGTAAGAGTTGCAGGCTAAGATGGACTAATTACTTAAGACCTGATCTTAAGCATGACAGTTTCACACCTCAAGAAGAAGAGCTTATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTATTGGAACACAAAATTAAGAAAAAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTCCTTTCTGACTTAGGAAGCATTAGTAGTCTCACATCAACAACCACTCAAAGCCAAATGAATTATGTCAATAATAATTCAATTTTGGAACACACAAAAGAGGAACAAATTCAATATTCATTGGAAAATGAACAAGTTCAATATGACCAATTCACTAACCAAGAGAGTTTCCAACAAAATATGTTAAGTGAAGTTGCATCTTCAAGTTCATCTTCATGTTCCTCTAATTTAACAAGGTTAAGCTCTCCGATTTCGCTAGCACAAATTAATTCTAATTTTGATTGGAGTGAGTTTCTTCAAAATGATGACCCTTTTGTGTGGCAAGAAATTCAAAATATTCAACAATGTGACATAAAAAGGGTAATGTCGTCATTGAGCATCTCAGGGGGTTTAATGAAAAATGAAGGTGAAATTTCCAATAATAATAATAATAATAATAATTTCAATGGTAATGGAAATGATAAACAAGGTTGTTCAAGTGAAGGTTTTGATGCAGTTACTTGTGTTGCAAGCAAGGATTATCAAGTTAATAATAAGCAATGTGAAGGAAAATCATTTTCAGGATATTCATTTGTGGATGGTATTTTGGACAAGGATAAAGAGATAAGGGCTGCATTTCCTGAATTATTGGATGATTCTTTTGATTATTAA 1044 0.34 MGRPPCCDKSNVKRGLWTPEEDAKILAYVAKHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIITLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLTSTTTQSQMNYVNNNSILEHTKEEQIQYSLENEQVQYDQFTNQESFQQNMLSEVASSSSSSCSSNLTRLSSPISLAQINSNFDWSEFLQNDDPFVWQEIQNIQQCDIKRVMSSLSISGGLMKNEGEISNNNNNNNNFNGNGNDKQGCSSEGFDAVTCVASKDYQVNNKQCEGKSFSGYSFVDGILDKDKEIRAAFPELLDDSFDY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00296 347 Gene3D - 7 67 - -
Trre12g00296 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre12g00296 347 CDD SANT 69 112 IPR001005 -
Trre12g00296 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre12g00296 347 FunFam Transcription factor RAX3 7 67 - -
Trre12g00296 347 SMART sant 66 114 IPR001005 -
Trre12g00296 347 SMART sant 13 63 IPR001005 -
Trre12g00296 347 PANTHER F14D16.11-RELATED 1 347 - -
Trre12g00296 347 CDD SANT 17 61 IPR001005 -
Trre12g00296 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre12g00296 347 Gene3D - 68 131 - -
Trre12g00296 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre12g00296 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre12g00296 347 FunFam transcription factor MYB80 69 129 - -
Trre12g00296 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre12g00296 347 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00296 Trre-Chr12 2490161 2492572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00296 1 347 MYB Transcription Factor Family AT3G28470 47.514 7.50e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g00296 Myb_DNA-binding 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00296 K09422 - gmx:100815077 395.586