Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00288 ATGTCTTCTTCACTCTCCTTTCTGTTCTTCACCATATTCACTTTCTGGGTATGTTTCACTTCATCCCAAGTTGAAGAAGACAGCGTAAAATGTCTCAGAGGAATACAACAACAAAACCCCAACAGTATTATCTCATCATGGAGTTTCAACAACAAAACTGTCGGATTTATATGTGACTTTGTTGGTGTTACATGTTGGAATGTTAGAGAAAATCGTGTTCTGGGTTTGGAGCTGAAAGGTATGAAACTTTCAGGTAAGATCCCAGAATCTTTGAAGTATTGTGGACAAAGTTTGCAAAAATTGGATCTTGGTTCAAATTCATTGACTTCAGTTATTCCAACACAGATCTGTGATTGGATGCCATTTTTGGTAACTATGGATTTATCAAGTAATGATCTTTCTGGTCCAATTCCTAATACTCTTGTGAATTGTTCATATTTGAATGAGTTAGTTTTATCTGATAATCATCTTAGTGGTAGTATACCTTATGGAATTGGTAGTTTAACTAGGCTTCATAAGTTTAATGTTGCTAATAATCAACTTAGTGGTGATATTCCACCTTTTTTTAATGGTATTACTAAGGAAGATTTTGATGGTAATAGTGGTTTATGTGGTGGTCCACTTGGATCAAAGTGTGGTGGTATGAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGTGTTTTTGGTGCTGCTGCTTCTTTGTTGTTGGCTTTTGGGTTATGGTGGTGGTATCATATTAGGTTGAGTGGGGAGAGGAGGGGGAGGAGTAAGGAAGGGTATGTTGTCGGCGGAGTTGATGATTGGGCGGTTAGGTTGCGAGGGCATAAACTTGCTCAAGTTAATCTTTTTCAGAAACCGATTGTTAAGGTTAAGCTTGGTGATTTGATGGCTGCTACGAATAATTTTAGTTCGGAGAATGTTCTTATTACGACTAGGACCGGGGCTACTTATAGGGCGGATTTACCGGATGGTTCGACGCTTGCGGTGAAGAGGTTGAGTAGTTGTAAGATTGGTGAGAAGCAGTTTCGGATGGAGATGAATCGGTTGGGACAAGTTAGGCATCCAAATTTGGCGCCTTTGTTGGGGTATTGTGTTGTGGAAGAGGAGAAGCTATTGGTTTATAAGCATATGTCGAACGGGACACTTTTTTCGTTGTTGCATAAGAATAGCGGTGCTTTGGATTGGTTGATGAGATTTAGGATAGGGTTGGGCGCAGCTAGGGGACTTGCGTGGTTGCATCATGGTTGTCATCCTCCGATTATACAACAAAATATTTGTTCTAATGTGATTCTTGTGGATGAAGAATTTGATGCTCGGATCATGGACTTTGGACTCGCCAGGCTCATGACTTCTGATGCCAATGGTAGTTTTGTGAACGGCGATTTGGGGGAACTCGGTTATATAGCTCCTGAGTATTCGAGTACGATGGTTGCTTCGTTGAAAGGGGATGTGTATGGATTCGGTGTTTTGCTTTTGGAGTTGGTCACCGGGTGCAAACCTCTTGAGGTGAACCACGGCGATGAAGAATTTAAGGGTAACTTGGTGGATTGGGTTAATGTGCATTCTAGTTCAGGTAGACTCAAGGATTGCATTGATAAGGTATTATGTGGAAAAGGCAACGATGAGGAGATTCTGCAGTTTCTGAAAATCGCATCCAATTGTGTCATTACTCGCCCGAAAGATAGGTGGTCTATGTACCAAGTTTATAATTCATTGAAGGGAATATCCAAAGATCACAGTTTCTCCGAACAAGATGACGAATTTCCCTTGATCTTCGGTAAGCCAGAAAACGAGCCAGCCTAG 1806 0.4092 MSSSLSFLFFTIFTFWVCFTSSQVEEDSVKCLRGIQQQNPNSIISSWSFNNKTVGFICDFVGVTCWNVRENRVLGLELKGMKLSGKIPESLKYCGQSLQKLDLGSNSLTSVIPTQICDWMPFLVTMDLSSNDLSGPIPNTLVNCSYLNELVLSDNHLSGSIPYGIGSLTRLHKFNVANNQLSGDIPPFFNGITKEDFDGNSGLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHIRLSGERRGRSKEGYVVGGVDDWAVRLRGHKLAQVNLFQKPIVKVKLGDLMAATNNFSSENVLITTRTGATYRADLPDGSTLAVKRLSSCKIGEKQFRMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLFSLLHKNSGALDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLMTSDANGSFVNGDLGELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGCKPLEVNHGDEEFKGNLVDWVNVHSSSGRLKDCIDKVLCGKGNDEEILQFLKIASNCVITRPKDRWSMYQVYNSLKGISKDHSFSEQDDEFPLIFGKPENEPA 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00288 601 Gene3D Phosphorylase Kinase; domain 1 265 377 - -
Trre12g00288 601 Pfam Protein tyrosine and serine/threonine kinase 325 503 IPR001245 GO:0004672|GO:0006468
Trre12g00288 601 SUPERFAMILY L domain-like 56 200 - -
Trre12g00288 601 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 265 377 - -
Trre12g00288 601 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515
Trre12g00288 601 ProSiteProfiles Protein kinase domain profile. 303 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00288 601 Gene3D Transferase(Phosphotransferase) domain 1 378 597 - -
Trre12g00288 601 Gene3D Ribonuclease Inhibitor 30 214 IPR032675 -
Trre12g00288 601 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 378 595 - -
Trre12g00288 601 FunFam Nuclear pore complex protein NUP107 25 187 - -
Trre12g00288 601 SUPERFAMILY Protein kinase-like (PK-like) 283 573 IPR011009 -
Trre12g00288 601 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 76 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00288 Trre-Chr12 2446062 2447867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00288 13 599 Receptor kinase-like Gene Family AT3G28450 63.149 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre12g00288 PK_Tyr_Ser-Thr 4.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00288 - - gmx:100810378 909.442