Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00283 ATGGGTGGTGGTGATCAGAAAAATGTTTCTATTGTTAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGATTATTTTTACATGATTTTTGGTTTATTGGGGTCTATTGGTGATGGAATAATGACCCCTTTAGTTTTGTTTATTACAAGCAAAATTATGAACTCTCTTGGTAATGCTTCTGGCACATCAAACAACAATTTTGTTCATAACATCAATGAGAATGCTGCTGTTTTGTTATATTTGGCTTGTGTCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTAGCATATTTTGATTTGCATGTTACTAGCACATCAGAAGTCATCACCAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTCCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTGGCATTTGCATTGTTATGGAGATTGGCCATTGTTGGATTCCCTTTTGTGATTTTTCTTGTGATTCCTGGTTTAATGTATGGAAGGACTTTGATGGGATTGGCTAAAAAAATCAGAGAAGAGTACAATCAAGCCGGTACAATAGCAGAACAAGCGATATCTTCGATCAGAACTGTTTATTCATTTGCAGGAGAAAGCAAAACCATTGCTGCTTTTTCTGATGCTTTGGATGGATCAGTGAAGTTGGGATTGAAACAAGGTTTGGCTAAAGGGTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGGCTTTTATGTCTTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGCACTGTTTTTGCAGTTGGAGCATCACTAGCAGTTGGTGGATTGGCATTAGGTGCTGGTTTATCAAATGTGAAGTATTTTTCAGAAGCAAGTGTTGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTACCAAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTATCAGGAGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTATAATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCAGTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTTTAGTTGATGGAGTTGGTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAAGAGAATATACTTTTTGGAAGAGAGGATGCTACATTTGAAGATATTGTTGATGCTGCTAAAGCTTCTAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGGATTGCCATTGCAAGAGCCATAATTAAAATGCCAAAAATTTTATTGCTAGACGAAGCGACAAGTGCACTTGATTCTGAATCCGAACGAGTTGTCCAAGAAGCTTTAGACAAAGCCGCGGTTGGACGGACCACCATCGTCATTGCTCACCGCTTATCCACAATTCAAAATGCGGACATCATTGCGGTCGTCCAAAATGGTAAGATCATGGAAACAGGATCTCATGAAAACCTCATGCAAAATGAAAATTCTCTTTACACCTCCCTCGTTCGTCTCCAACAAACAAAAAATGACCAAAACGACGACACTTCATCTATCTTGAATAGAGATCACATGCAAAGCATGAGTAGTCGTAGACTCGTGAGTCATTCTAGCTCTTTCAACTCAATGACTCGCGGTGGTGATGATATCGTTAATTATAATAGTGGTGGTGATGATATCGTTAATAATGTTGATGTAGATGATGATCATAATAATAACAATAATAATAAAAAGAACGTTGAGGTTCCTTCGTTTCGAAGGTTGTTGGCAATGAATCTACCAGAGTGGAAGCAAGCATGTTTGGGTTGTTTAAATGCGCTTTTATTCGGTGCGATTCAACCTGTATATGCTTTCGCAATGGGGTCGGTTATATCGGTTTATTTTCTGGAGGACCATGATGAGATTAAGAAGCAAATTAGGATCTATGTGTTTTGTTTTCTAGGGTTGGCTGTGTCCTCAATGGTTTTTAATATTCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTAACTAAAAGGGTCAGAGAAAGAATGTTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTTGATGAAGATCAAAATTCTACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTTGGTGATAGATTGGCTCTAGTGGTACAAACTATATCAGCAGTTGTAATAGCATTCACAATGGGCCTAGTCATTGCTTGGAGACTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTTAAGAACATGTCAAGTAAAGCAATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGATAGAATCCTCAAAATGCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAGCATTAGACAATCTTGGTATGCAGGTATTGGGCTTGCATGTTCACAAAGCCTCAATTTTTGTACTTGGGCCTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATCTCATCAAAGGCATTGTTTGAGACTTTTATGATTTTGGTAAGCACAGGAAGAGTTATTGCCGATGCCGGTAGCATGACTAATGATCTTGCTAAAGGCTCTGATGCCGTTGGATCGGTTTTCGCAATTCTAGATAGGTATACAAAAATTGAGCCGGATGATATAGAAGGTCACAAAGCCGAAAAATTAATAGGAAAAATTGAACTTCATGATGTACATTTTGCATATCCAGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCAATTAAAATTGATGCCGGGAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGATCCAATTAAAGGGATAGTGACAATTGATGGTAGAGACATAAAATCTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTATGATGATAAAGTTGATGAGAGTGAGATTATTGAGGCTTCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATGGTGTGGTGAAAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAAGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAAATAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAATTGTGATTTGATTGCTGTTTTGGATAAAGGAAGTATTATTGAGAAAGGAACGCATTCATCTTTGTTGTCTAAAGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGACCAACCAACACAATTGTTGATTCTTCTCATGAAATCAACTAA 3813 0.3737 MGGGDQKNVSIVKKKKNGSFKSIFMHADVLDYFYMIFGLLGSIGDGIMTPLVLFITSKIMNSLGNASGTSNNNFVHNINENAAVLLYLACVSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVIFLVIPGLMYGRTLMGLAKKIREEYNQAGTIAEQAISSIRTVYSFAGESKTIAAFSDALDGSVKLGLKQGLAKGLAIGSNGVVFAIWAFMSYYGSRMVMYHGAKGGTVFAVGASLAVGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVSGEVEFNHVEFVYPSRPESIILNDFSLKVPSGKTVALVGGSGSGKSTVVSVLQRFYDPIGGEILVDGVGIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATFEDIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIVIAHRLSTIQNADIIAVVQNGKIMETGSHENLMQNENSLYTSLVRLQQTKNDQNDDTSSILNRDHMQSMSSRRLVSHSSSFNSMTRGGDDIVNYNSGGDDIVNNVDVDDDHNNNNNNKKNVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYVFCFLGLAVSSMVFNILQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAICSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSSKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQGPSHESIRQSWYAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISSKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDIEGHKAEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPIKGIVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKDGYETWCGERGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKIVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSIIEKGTHSSLLSKGPSGAYYSLVSLQRRPTNTIVDSSHEIN 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00283 1270 Pfam ABC transporter transmembrane region 35 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00283 1270 Pfam ABC transporter transmembrane region 693 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00283 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 598 IPR027417 -
Trre12g00283 1270 CDD ABC_MTABC3_MDL1_MDL2 1014 1255 - -
Trre12g00283 1270 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Trre12g00283 1270 MobiDBLite consensus disorder prediction 602 632 - -
Trre12g00283 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1252 IPR003439 GO:0005524
Trre12g00283 1270 Gene3D ABC transporter type 1, transmembrane domain 84 988 IPR036640 GO:0005524|GO:0016020
Trre12g00283 1270 SUPERFAMILY ABC transporter transmembrane region 31 344 IPR036640 GO:0005524|GO:0016020
Trre12g00283 1270 SMART AAA_5 1041 1235 IPR003593 GO:0016887
Trre12g00283 1270 SMART AAA_5 387 579 IPR003593 GO:0016887
Trre12g00283 1270 FunFam ABC transporter B family member 4 350 606 - -
Trre12g00283 1270 Gene3D - 358 611 IPR027417 -
Trre12g00283 1270 PANTHER ABC TRANSPORTER B FAMILY 12 747 IPR039421 -
Trre12g00283 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Trre12g00283 1270 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Trre12g00283 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Trre12g00283 1270 Pfam ABC transporter 1033 1183 IPR003439 GO:0005524
Trre12g00283 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1255 IPR027417 -
Trre12g00283 1270 Gene3D - 1004 1263 IPR027417 -
Trre12g00283 1270 FunFam ABC transporter B family member 4 1004 1261 - -
Trre12g00283 1270 FunFam ABC transporter B family member 1 22 359 - -
Trre12g00283 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00283 1270 FunFam Putative ABC transporter B family member 8 656 1002 - -
Trre12g00283 1270 SUPERFAMILY ABC transporter transmembrane region 673 998 IPR036640 GO:0005524|GO:0016020
Trre12g00283 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00283 1270 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524|GO:0016887
Trre12g00283 1270 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Trre12g00283 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00283 Trre-Chr12 2365338 2374067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00283 693 1268 Calmodulin-binding Proteins AT2G36910 36.332 3.02e-111 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00283 K05658 - gmx:100807709 1994.55