Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00282 ATGGGTGGTGGTGATCAGAAAAATGTTTCTATTGTTAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGATTATTTTTACATGATTTTTGGTTTATTGGGGTCTATTGGTGATGGAATAATGACCCCTTTAGTTTTGTTTATTACAAGCAAAATTATGAACTCTCTTGGTAATGCTTCTGGCACATCAAACAACAATTTTGTTCATAACATCAATGAGAATGCTGCTGTTTTGTTATATTTGGCTTGTGTCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTAGCATATTTTGATTTGCATGTTACTAGCACATCAGAAGTCATCACCAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTCCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTGGCATTTGCATTGTTATGGAGATTGGCCATTGTTGGATTCCCTTTTGTGATTTTTCTTGTGATTCCTGGTTTAATGTATGGAAGGACTTTGATGGGATTGGCTAAAAAAATCAGAGAAGAGTACAATCAAGCCGGTACAATAGCAGAACAAGCGATATCTTCGATCAGAACTGTTTATTCATTTGCAGGAGAAAGCAAAACCATTGCTGCTTTTTCTGATGCTTTGGATGGATCAGTGAAGTTGGGATTGAAACAAGGTTTGGCTAAAGGGTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGGCTTTTATGTCTTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGCACTGTTTTTGCAGTTGGAGCATCACTAGCAGTTGGTGGATTGGCATTAGGTGCTGGTTTATCAAATGTGAAGTATTTTTCAGAAGCAAGTGTTGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTACCAAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTATCAGGAGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTATAATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCAGTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTTTAGTTGATGGAGTTGGTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAAGAGAATATACTTTTTGGAAGAGAGGATGCTACATTTGAAGATATTGTTGATGCTGCTAAAGCTTCTAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGGATTGCCATTGCAAGAGCCATAATTAAAATGCCAAAAATTTTATTGCTAGACGAAGCGACAAGTGCACTTGATTCTGAATCCGAACGAGTTGTCCAAGAAGCTTTAGACAAAGCCGCGGTTGGACGGACCACCATCGTCATTGCTCACCGCTTATCCACAATTCAAAATGCGGACATCATTGCGGTCGTCCAAAATGGTAAGATCATGGAAACAGGATCTCATGAAAACCTCATGCAAAATGAAAATTCTCTTTACACCTCCCTCGTTCGTCTCCAACAAACAAAAAATGACCAAAACGACGACACTTCATCTATCTTGAATAGAGATCACATGCAAAGCATGAGTAGTCGTAGACTCGTGAGTCATTCTAGCTCTTTCAACTCAATGACTCGCGGTGATGATGATCATAATAATAACAATAATAATAAAAAGAACGTTGAGGTTCCTTCGTTTCGAAGGTTGTTGGCAATGAATCTACCAGAGTGGAAGCAAGCATGTTTGGGTTGTTTAAATGCGCTTTTATTCGGTGCGATTCAACCTGTATATGCTTTCGCAATGGGGTCGGTTATATCGGTTTATTTTCTGGAGGACCATGATGAGATTAAGAAGCAAATTAGGATCTATGTGTTTTGTTTTCTAGGGTTGGCTGTGTCCTCAATGGTTTTTAATATTCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTAACTAAAAGGGTCAGAGAAAGAATGTTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTTGATGAAGATCAAAATTCTACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTTGGTGATAGATTGGCTCTAGTGGTACAAACTATATCAGCAGTTGTAATAGCATTCACAATGGGCCTAGTCATTGCTTGGAGACTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTTAAGAACATGTCAAGTAAAGCAATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGATAGAATCCTCAAAATGCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAGCATTAGACAATCTTGGTATGCAGGTATTGGGCTTGCATGTTCACAAAGCCTCAATTTTTGTACTTGGGCCTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATCTCATCAAAGGCATTGTTTGAGACTTTTATGATTTTGGTAAGCACAGGAAGAGTTATTGCCGATGCCGGTAGCATGACTAATGATCTTGCTAAAGGCTCTGATGCCGTTGGATCGGTTTTCGCAATTCTAGATAGGTATACAAAAATTGAGCCGGATGATATAGAAGGTCACAAAGCCGAAAAATTAATAGGAAAAATTGAACTTCATGATGTACATTTTGCATATCCAGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCAATTAAAATTGATGCCGGGAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGATCCAATTAAAGGGATAGTGACAATTGATGGTAGAGACATAAAATCTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTATGATGATAAAGTTGATGAGAGTGAGATTATTGAGGCTTCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATGGTGTGGTGAAAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAAGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAAATAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAATTGTGATTTGATTGCTGTTTTGGATAAAGGAAGTATTATTGAGAAAGGAACGCATTCATCTTTGTTGTCTAAAGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGACCAACCAACACAATTGTTGATTCTTCTCATGAAATCAACTAA 3753 0.3749 MGGGDQKNVSIVKKKKNGSFKSIFMHADVLDYFYMIFGLLGSIGDGIMTPLVLFITSKIMNSLGNASGTSNNNFVHNINENAAVLLYLACVSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVIFLVIPGLMYGRTLMGLAKKIREEYNQAGTIAEQAISSIRTVYSFAGESKTIAAFSDALDGSVKLGLKQGLAKGLAIGSNGVVFAIWAFMSYYGSRMVMYHGAKGGTVFAVGASLAVGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVSGEVEFNHVEFVYPSRPESIILNDFSLKVPSGKTVALVGGSGSGKSTVVSVLQRFYDPIGGEILVDGVGIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATFEDIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIVIAHRLSTIQNADIIAVVQNGKIMETGSHENLMQNENSLYTSLVRLQQTKNDQNDDTSSILNRDHMQSMSSRRLVSHSSSFNSMTRGDDDHNNNNNNKKNVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYVFCFLGLAVSSMVFNILQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAICSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSSKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQGPSHESIRQSWYAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISSKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDIEGHKAEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPIKGIVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKDGYETWCGERGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKIVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSIIEKGTHSSLLSKGPSGAYYSLVSLQRRPTNTIVDSSHEIN 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00282 1250 Pfam ABC transporter 1013 1163 IPR003439 GO:0005524
Trre12g00282 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 598 IPR027417 -
Trre12g00282 1250 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Trre12g00282 1250 FunFam ABC transporter B family member 4 350 606 - -
Trre12g00282 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1235 IPR027417 -
Trre12g00282 1250 PANTHER ABC TRANSPORTER B FAMILY 12 729 IPR039421 -
Trre12g00282 1250 Pfam ABC transporter transmembrane region 673 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00282 1250 Pfam ABC transporter transmembrane region 35 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00282 1250 SUPERFAMILY ABC transporter transmembrane region 31 344 IPR036640 GO:0005524|GO:0016020
Trre12g00282 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 977 - -
Trre12g00282 1250 Gene3D - 350 599 IPR027417 -
Trre12g00282 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Trre12g00282 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Trre12g00282 1250 SUPERFAMILY ABC transporter transmembrane region 653 978 IPR036640 GO:0005524|GO:0016020
Trre12g00282 1250 SMART AAA_5 1021 1215 IPR003593 GO:0016887
Trre12g00282 1250 SMART AAA_5 387 579 IPR003593 GO:0016887
Trre12g00282 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00282 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g00282 1250 FunFam ABC transporter B family member 4 984 1241 - -
Trre12g00282 1250 FunFam Putative ABC transporter B family member 8 636 982 - -
Trre12g00282 1250 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Trre12g00282 1250 Gene3D - 984 1243 IPR027417 -
Trre12g00282 1250 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Trre12g00282 1250 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524|GO:0016887
Trre12g00282 1250 MobiDBLite consensus disorder prediction 602 641 - -
Trre12g00282 1250 FunFam ABC transporter B family member 1 22 359 - -
Trre12g00282 1250 Gene3D ABC transporter type 1, transmembrane domain 23 963 IPR036640 GO:0005524|GO:0016020
Trre12g00282 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1232 IPR003439 GO:0005524
Trre12g00282 1250 CDD ABC_MTABC3_MDL1_MDL2 994 1235 - -
Trre12g00282 1250 MobiDBLite consensus disorder prediction 602 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00282 Trre-Chr12 2365338 2374067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00282 673 1248 Calmodulin-binding Proteins AT2G36910 36.332 1.72e-111 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00282 K05658 - gmx:100807709 1995.32