Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00281 ATGAAGAGGGCAAGAGATGATATTTACTCTTCTTCTCAATTCAAACGTCCCTTTGGTTCTTCACGTGGTGATTCCTATGGCCAAGGCCCTGGGAATGGAGGTGGCGGTGGAGGAGGTGGACTTGTTATCGGCGGAGGAGGAGGTGGGGGAGCAACTACTTCCCAAAAACTCACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAAGACCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCAAGGTGTCATAGAAAGGGTAAAGGACCTCTTCAAAGGTCACAACAATTTGATTTTTGGATTCAACACTTTCCTGCCAAAAGGATATGAGATAACGCTTGATGAAGAGGAGGCTCCTCAGAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGCTTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGGAGATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAAGAGCATAGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCTTTGCAGCGCTTCAATGAGCGAAGTTCTATGACACCCATGATGCGGCAAATGCAAGCAGAAAAGGTACAACGTTATCGGCGAGATCGATTTCCTTCCCATGATCGTGATATGAGTGTTGAACGTCCTGATTTGGATGACGACAAGACAATGATGAACATGCACAAGGAGCAAAGGAAACGCGAGAGCAGGGATAGAAGGATTCGCGATCATGATGATAGAGAACATGATCTTGATAACTCACAACGCCTTCCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGGCTGTCTTCTGACTTAGCTTCTCACGATGATAAAGATGCATTAAAGATCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTACAAAATTTGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGAAGGTCATTCATCAAGATCAACCAAGTTGGAGGAAAAAGAACACAAGCGTGAGATGGACGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAACTTGGTGCGCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGACGACAGGTTTGAGTTGGACATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGAAGAGTTGTATAACAACATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGCATTGAAGATCACTTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGACGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCCGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCGCAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGACATCGTTCAGTCTATTGCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCTGATGCTGATATTCACGAGGATCTGTATAAACTGGTTCGTTATTCATGTGAGGAAGTATTCTCAAGTAAAGAGTTATTCAATAAAATCATGAGGCTCTGGAGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCGCACGGGACAGAAAGGATAGAGGACAGGAAAGTAGGACAAAGCGCTCGGAGTTCTGTTGCACCTAATGTAGGAGGTGATGGAAGCCCTCACAGAGACTCAATTTCAAGGTTACCAAAATCTGACAAGACTGAAGTTGAAGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGACCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATCTTTTATTGGATAATAAAGGACAGAAAAGTGTTGAATGCAGTGATAAAGCCCCTGGATTTGGTAAACAGATCTCATCTGATGAACAAGCAGCAAGAAACTCTGCATCTGTCAATATTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGTAACCATAGCCAAGTCTCCGAGTTCTAATGTACCTTTGGTGGAGGGATGTGACGTTGCCACTCCAGTACCAGTTACTAATGGCATGTTAATTGAGAACAGTAAAATTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGAGGAAGATAACTTTGCTGCCTATGAAGATTCAAATGTGCAGTCAAAGCACAATGTTGATAGTGGCAAATATGAGTCTAAAAATGGAGAGGCTGGAGGTGACAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGGAGATCACGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGCGACACACAAACTGGAGGAGATGGCTCACCTTTACCATTATCAGAGAGGTTCCTTTCGACTGTGAAACCTCTCACAAAGCATGTATCAGCAATCTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCCGAAATGAAATGGAAAGCAAAAGATTCTACTTCCACAGATTCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCTGCCGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAGTCTTATGTGTTATTCACATTAGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACTGATGAGGAAGACAATAAGCTTCTTCAATTATATGAGTACGAAAAATCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAGAACATATATCGTTTTCAATCTTCCTCAAGCCCTTCTCGACTCTCCATTCAGCTCATGGACAATATGAATGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAGATTTTTCTTTTTATCTGCACAATGATTTTCTTTCTGTCCTTCCTGCCAAAAAGGAACCGCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAAAAAAAGACAAACATCTTCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAAGGAAAGAGAGGAAAGATATCGCAAATTGATGACGTCCTCCACCTAA 4113 0.4094 MKRARDDIYSSSQFKRPFGSSRGDSYGQGPGNGGGGGGGGLVIGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTQGVIERVKDLFKGHNNLIFGFNTFLPKGYEITLDEEEAPQKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKEIGEVYSEVATLFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERSSMTPMMRQMQAEKVQRYRRDRFPSHDRDMSVERPDLDDDKTMMNMHKEQRKRESRDRRIRDHDDREHDLDNSQRLPDKKKSVKKAEAYGLSSDLASHDDKDALKIMYSQAFSFCEKVKEKLSSAEDYQAFLKCLHIFSNGIIRRNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLATEGHSSRSTKLEEKEHKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNIIENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGAKHPLIPHLEFDFSDADIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSTFLEPMLGVTSQSHGTERIEDRKVGQSARSSVAPNVGGDGSPHRDSISRLPKSDKTEVEGRVTEVKNGHQTSVATNGKENGSVGRDDLLLDNKGQKSVECSDKAPGFGKQISSDEQAARNSASVNIRGESSVNRTNLDMSPGRVLTPSRPTDADVSVTIAKSPSSNVPLVEGCDVATPVPVTNGMLIENSKIKSHEESSVPCKVEKEEGELSPNADSEEDNFAAYEDSNVQSKHNVDSGKYESKNGEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECSRGDHEEEDMEHDDVDGKAESEGEAEGMCDTQTGGDGSPLPLSERFLSTVKPLTKHVSAISFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTSAEMKWKAKDSTSTDSYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPDFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRKKRQTSSSSSSTSSSRSRKEREERYRKLMTSST 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00281 1370 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
Trre12g00281 1370 MobiDBLite consensus disorder prediction 921 1055 - -
Trre12g00281 1370 SMART hdac_interact2seq4b 466 566 IPR013194 -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 970 984 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 427 446 - -
Trre12g00281 1370 Gene3D Paired amphipathic helix 332 406 IPR036600 GO:0006355
Trre12g00281 1370 MobiDBLite consensus disorder prediction 421 446 - -
Trre12g00281 1370 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Trre12g00281 1370 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Trre12g00281 1370 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Trre12g00281 1370 PANTHER SIN3B-RELATED 55 1228 IPR039774 GO:0003714
Trre12g00281 1370 MobiDBLite consensus disorder prediction 778 797 - -
Trre12g00281 1370 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Trre12g00281 1370 Pfam C-terminal domain of Sin3a protein 1086 1333 IPR031693 -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 743 885 - -
Trre12g00281 1370 Gene3D Paired amphipathic helix 137 210 IPR036600 GO:0006355
Trre12g00281 1370 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Trre12g00281 1370 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Trre12g00281 1370 MobiDBLite consensus disorder prediction 244 315 - -
Trre12g00281 1370 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Trre12g00281 1370 MobiDBLite consensus disorder prediction 1352 1370 - -
Trre12g00281 1370 FunFam Paired amphipathic helix protein Sin3 61 123 - -
Trre12g00281 1370 Coils Coil 539 559 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 923 944 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 846 875 - -
Trre12g00281 1370 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Trre12g00281 1370 MobiDBLite consensus disorder prediction 817 831 - -
Trre12g00281 1370 Pfam Sin3 family co-repressor 468 559 IPR013194 -
Trre12g00281 1370 SUPERFAMILY PAH2 domain 337 404 IPR036600 GO:0006355
Trre12g00281 1370 MobiDBLite consensus disorder prediction 1 41 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 798 812 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 985 999 - -
Trre12g00281 1370 FunFam Paired amphipathic helix protein SIN3 332 406 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 229 315 - -
Trre12g00281 1370 FunFam Paired amphipathic helix SIN3-like protein 138 209 - -
Trre12g00281 1370 MobiDBLite consensus disorder prediction 1337 1370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00281 Trre-Chr12 2346127 2355249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00281 41 158 WRKY Transcription Factor Family AT4G12020 49.580 7.87e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g00281 Sin3a_C 2.7e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00281 K11644 - gmx:100807181 2138.23