Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00280 ATGAAGAGGGCAAGAGATGATATTTACTCTTCTTCTCAATTCAAACGTCCCTTTGGTTCTTCACGTGGTGATTCCTATGGCCAAGGCCCTGGGAATGGAGGTGGCGGTGGAGGAGGTGGACTTGTTATCGGCGGAGGAGGAGGTGGGGGAGCAACTACTTCCCAAAAACTCACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAAGACCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCAAGGTGTCATAGAAAGGGTAAAGGACCTCTTCAAAGGTCACAACAATTTGATTTTTGGATTCAACACTTTCCTGCCAAAAGGATATGAGATAACGCTTGATGAAGAGGAGGCTCCTCAGAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGCTTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGGAGATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAAGAGCATAGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCTTTGCAGCGCTTCAATGAGCGAAGTTCTATGACACCCATGATGCGGCAAATGCAAGCAGAAAAGCAACGTTATCGGCGAGATCGATTTCCTTCCCATGATCGTGATATGAGTGTTGAACGTCCTGATTTGGATGACGACAAGACAATGATGAACATGCACAAGGAGCAAAGGAAACGCGAGAGCAGGGATAGAAGGATTCGCGATCATGATGATAGAGAACATGATCTTGATAACTCACAACGCCTTCCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGGCTGTCTTCTGACTTAGCTTCTCACGATGATAAAGATGCATTAAAGATCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTACAAAATTTGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGAAGGTCATTCATCAAGATCAACCAAGTTGGAGGAAAAAGAACACAAGCGTGAGATGGACGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAACTTGGTGCGCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGACGACAGGTTTGAGTTGGACATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGAAGAGTTGTATAACAACATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGCATTGAAGATCACTTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGACGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCCGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCGCAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGACATCGTTCAGTCTATTGCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCTGATGCTGATATTCACGAGGATCTGTATAAACTGGTTCGTTATTCATGTGAGGAAGTATTCTCAAGTAAAGAGTTATTCAATAAAATCATGAGGCTCTGGAGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCGCACGGGACAGAAAGGATAGAGGACAGGAAAGTAGGACAAAGCGCTCGGAGTTCTGTTGCACCTAATGTAGGAGGTGATGGAAGCCCTCACAGAGACTCAATTTCAAGGTTACCAAAATCTGACAAGACTGAAGTTGAAGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGACCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATCTTTTATTGGATAATAAAGGACAGAAAAGTGTTGAATGCAGTGATAAAGCCCCTGGATTTGGTAAACAGATCTCATCTGATGAACAAGCAGCAAGAAACTCTGCATCTGTCAATATTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGTAACCATAGCCAAGTCTCCGAGTTCTAATGTACCTTTGGTGGAGGGATGTGACGTTGCCACTCCAGTACCAGTTACTAATGGCATGTTAATTGAGAACAGTAAAATTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGAGGAAGATAACTTTGCTGCCTATGAAGATTCAAATGTGCAGTCAAAGCACAATGTTGATAGTGGCAAATATGAGTCTAAAAATGGAGAGGCTGGAGGTGACAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGGAGATCACGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGCGACACACAAACTGGAGGAGATGGCTCACCTTTACCATTATCAGAGAGGTTCCTTTCGACTGTGAAACCTCTCACAAAGCATGTATCAGCAATCTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCCGAAATGAAATGGAAAGCAAAAGATTCTACTTCCACAGATTCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCTGCCGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAGTCTTATGTGTTATTCACATTAGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACTGATGAGGAAGACAATAAGCTTCTTCAATTATATGAGTACGAAAAATCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAGAACATATATCGTTTTCAATCTTCCTCAAGCCCTTCTCGACTCTCCATTCAGCTCATGGACAATATGAATGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAGATTTTTCTTTTTATCTGCACAATGATTTTCTTTCTGTCCTTCCTGCCAAAAAGGAACCGCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAAAAAAAGACAAACATCTTCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAAGGAAAGAGAGGAAAGATATCGCAAATTGATGACGTCCTCCACCTAA 4110 0.4095 MKRARDDIYSSSQFKRPFGSSRGDSYGQGPGNGGGGGGGGLVIGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTQGVIERVKDLFKGHNNLIFGFNTFLPKGYEITLDEEEAPQKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKEIGEVYSEVATLFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERSSMTPMMRQMQAEKQRYRRDRFPSHDRDMSVERPDLDDDKTMMNMHKEQRKRESRDRRIRDHDDREHDLDNSQRLPDKKKSVKKAEAYGLSSDLASHDDKDALKIMYSQAFSFCEKVKEKLSSAEDYQAFLKCLHIFSNGIIRRNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLATEGHSSRSTKLEEKEHKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNIIENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGAKHPLIPHLEFDFSDADIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSTFLEPMLGVTSQSHGTERIEDRKVGQSARSSVAPNVGGDGSPHRDSISRLPKSDKTEVEGRVTEVKNGHQTSVATNGKENGSVGRDDLLLDNKGQKSVECSDKAPGFGKQISSDEQAARNSASVNIRGESSVNRTNLDMSPGRVLTPSRPTDADVSVTIAKSPSSNVPLVEGCDVATPVPVTNGMLIENSKIKSHEESSVPCKVEKEEGELSPNADSEEDNFAAYEDSNVQSKHNVDSGKYESKNGEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECSRGDHEEEDMEHDDVDGKAESEGEAEGMCDTQTGGDGSPLPLSERFLSTVKPLTKHVSAISFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTSAEMKWKAKDSTSTDSYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPDFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRKKRQTSSSSSSTSSSRSRKEREERYRKLMTSST 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00280 1369 MobiDBLite consensus disorder prediction 1351 1369 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 797 811 - -
Trre12g00280 1369 SUPERFAMILY PAH2 domain 336 403 IPR036600 GO:0006355
Trre12g00280 1369 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Trre12g00280 1369 Pfam Sin3 family co-repressor 467 558 IPR013194 -
Trre12g00280 1369 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Trre12g00280 1369 Gene3D Paired amphipathic helix 331 405 IPR036600 GO:0006355
Trre12g00280 1369 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Trre12g00280 1369 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Trre12g00280 1369 FunFam Paired amphipathic helix protein Sin3 61 123 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 1336 1369 - -
Trre12g00280 1369 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Trre12g00280 1369 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Trre12g00280 1369 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Trre12g00280 1369 MobiDBLite consensus disorder prediction 243 314 - -
Trre12g00280 1369 FunFam Paired amphipathic helix protein SIN3 331 405 - -
Trre12g00280 1369 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Trre12g00280 1369 SMART hdac_interact2seq4b 465 565 IPR013194 -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 777 796 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 922 943 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 920 1053 - -
Trre12g00280 1369 Gene3D Paired amphipathic helix 137 210 IPR036600 GO:0006355
Trre12g00280 1369 MobiDBLite consensus disorder prediction 209 240 - -
Trre12g00280 1369 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
Trre12g00280 1369 MobiDBLite consensus disorder prediction 742 884 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 1 41 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 969 983 - -
Trre12g00280 1369 Pfam C-terminal domain of Sin3a protein 1085 1332 IPR031693 -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 209 314 - -
Trre12g00280 1369 Coils Coil 538 558 - -
Trre12g00280 1369 PANTHER SIN3B-RELATED 55 1227 IPR039774 GO:0003714
Trre12g00280 1369 MobiDBLite consensus disorder prediction 984 998 - -
Trre12g00280 1369 FunFam Paired amphipathic helix SIN3-like protein 138 209 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 845 874 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 426 445 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 816 830 - -
Trre12g00280 1369 MobiDBLite consensus disorder prediction 420 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00280 Trre-Chr12 2346127 2355249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00280 41 158 WRKY Transcription Factor Family AT4G12020 49.580 7.86e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g00280 Sin3a_C 2.7e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00280 K11644 - gmx:100807181 2133.61