Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00274 ATGGACGCAAGAACCATAGGACATAAACGGCAGAGGCATCCACAGGAGAAGCAAATGCAAAACAAAAAGCATGAATCAAGCAACACAAATCATATCATCAATGCATTGCTAGTAGATGGTGTGACTAAAACCAGACGTTTGGAGCATAATATGCTTGAATCAATAGGTGTTCCAACAAAGTCTGTAATTGGTGCTCAAGAAGCAATACAACTTTTGTTGACTGGTGTTAAATTTGACTTCATATTTGTTGATTTTGATTTGTCCAGTACCAATGGACCTCAGTTGGTGAGGCAGATGCGTGCAATGGGAGTAGCAAGCAAGGTGGTGGGCATGTTAACATACATCAATGATCATGATAAACAAATGTTTCATGAATGA 378 0.3915 MDARTIGHKRQRHPQEKQMQNKKHESSNTNHIINALLVDGVTKTRRLEHNMLESIGVPTKSVIGAQEAIQLLLTGVKFDFIFVDFDLSSTNGPQLVRQMRAMGVASKVVGMLTYINDHDKQMFHE 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00274 125 Gene3D - 8 125 - -
Trre12g00274 125 SUPERFAMILY CheY-like 34 122 IPR011006 -
Trre12g00274 125 ProSiteProfiles Response regulatory domain profile. 34 125 IPR001789 GO:0000160
Trre12g00274 125 CDD REC 36 113 - -
Trre12g00274 125 MobiDBLite consensus disorder prediction 1 28 - -
Trre12g00274 125 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 123 - -
Trre12g00274 125 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00274 Trre-Chr12 2311661 2312542 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00274 32 121 Response Regulator Gene Family AT3G04280 29.670 2.45e-07 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g00274 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00274 - K04965 tpra:123904015 202.986