Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00272 ATGGGTGCACCATCCATGATGAAGTCCAAGGAGACAAAAATGCGAATCATAAAGCGTAAATCAAATGACACTCCTTATCCCATTACTGCATTGCTAGTAGATGGTGTGACTGCAACCAGGCGTTTGGAGCATCATATGCTTGAATCAATAGGCATTCGAACAGAACCTGCAAATGGTGCTGAAGAAGCAATTCAAATTTTATCGACTGGTGTAAACTTTGACTTCATATTTGTTGATTCTGATTTGCCGATTACCAGTGGACCTCAGTTGGTGAGACAGATGCGTGCAATGGGGATACGGGGCAAGGTGGTGGGAATGATAGAAAATTTGAACAATCAAAATCTGCAAATGTTTCATCAAGCAAGAGCTGATGCCTGCGTTACAAAACCTTTTACCCCAGAAGGCTTACAACATATCATTCGAATCCTTCGACGCATCTTAGGAAACTAA 450 0.4178 MGAPSMMKSKETKMRIIKRKSNDTPYPITALLVDGVTATRRLEHHMLESIGIRTEPANGAEEAIQILSTGVNFDFIFVDSDLPITSGPQLVRQMRAMGIRGKVVGMIENLNNQNLQMFHQARADACVTKPFTPEGLQHIIRILRRILGN 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00272 149 SMART REC_2 28 140 IPR001789 GO:0000160
Trre12g00272 149 SUPERFAMILY CheY-like 27 143 IPR011006 -
Trre12g00272 149 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Trre12g00272 149 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 143 - -
Trre12g00272 149 Gene3D - 15 146 - -
Trre12g00272 149 Pfam Response regulator receiver domain 31 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00272 Trre-Chr12 2304686 2306574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00272 28 132 Response Regulator Gene Family AT3G04280 28.037 1.39e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g00272 Response_reg 1.1e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00272 - K13587 tpra:123906480 211.46