Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00267 ATGTTTTCTTGGAGTGACAAGGCCCAAGTCATGAAAACATTAGACAATCTTGGTTTGCTGGTAAGCTTGCTTGTTTCCAAAGCCTCAATTTTTGTACTAGGGCTTTACACTTTTAGGGCTTTACACTTTTGGTATGGTGGACAACTTGTGTCACATGGTTATATAACAAAAAAAGCATTATTTGAGACTATAATGATTTTTGTTAGCACTGGAAAAGTTATTGCTGATGTTGCTGGTAGCATGACTAATGATCTTGCTAAAGGTTCCGATGCCGTTGGATCGGTTTTTGCAATCCTCGATAGGTCTACGAAAATTGAGCCCGATGAATTAGAAGGTTACAAGGTTGAAAATTTAATAGGAAAAGTCAAACTTCATGATGTACATTTTGCATATCCGGCTAGACCTAATGTGATGATCTTTCGAGGGTTCTCGGTTAAAGTTGATGCCGGAAAATCAACAGCTTTGGTCGGGGAAAGTGGTTCGGGAAAATCAACAATCATGGGACTAATTGAAAGATTCTATGATCCAATTAAAGGGATAGTGACAATTGATGGTAGAGACATAAAGTCTTATAATCTAAGGTCATTAAGGAAACATATTGCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCACAAGGGAAAATATTGCATATGGAGCTTATGCTGATAAATTTGATGGCATCAAAGGCTGCAAATGCTCATGA 711 0.3797 MFSWSDKAQVMKTLDNLGLLVSLLVSKASIFVLGLYTFRALHFWYGGQLVSHGYITKKALFETIMIFVSTGKVIADVAGSMTNDLAKGSDAVGSVFAILDRSTKIEPDELEGYKVENLIGKVKLHDVHFAYPARPNVMIFRGFSVKVDAGKSTALVGESGSGKSTIMGLIERFYDPIKGIVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTTRENIAYGAYADKFDGIKGCKCS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00267 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 223 IPR027417 -
Trre12g00267 236 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 28 225 IPR039421 -
Trre12g00267 236 Pfam ABC transporter 142 222 IPR003439 GO:0005524
Trre12g00267 236 Gene3D ABC transporter type 1, transmembrane domain 28 111 IPR036640 GO:0005524|GO:0016020
Trre12g00267 236 Gene3D - 112 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00267 Trre-Chr12 2272261 2272971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00267 35 221 Calmodulin-binding Proteins AT2G36910 46.809 2.07e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00267 K05658 - gmx:100807709 304.679